BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0710100 Os03g0710100|AK069094
(119 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G25840.1 | chr3:9452993-9457446 REVERSE LENGTH=936 170 1e-43
AT3G53640.1 | chr3:19887007-19888935 REVERSE LENGTH=643 158 7e-40
AT1G13350.2 | chr1:4572502-4576547 REVERSE LENGTH=789 154 1e-38
>AT3G25840.1 | chr3:9452993-9457446 REVERSE LENGTH=936
Length = 935
Score = 170 bits (431), Expect = 1e-43, Method: Composition-based stats.
Identities = 73/119 (61%), Positives = 100/119 (84%)
Query: 1 TGKILFDGSTNNDMLRLHMELKGPFPKKMLRKGAFTMQHFDQNLNFLARKKDPITKTVVN 60
+GK+LF G+TNNDMLRLHMELKGPFPKKMLRKGAF QHFD +LNF A ++D ++ ++
Sbjct: 817 SGKVLFPGATNNDMLRLHMELKGPFPKKMLRKGAFIDQHFDHDLNFYATEEDTVSGKLIK 876
Query: 61 RLLLNIKPKGVGSAISSCPGDDPKMISSFKDLLEKIFVLDPKKRITVPEALSHPFITAK 119
R+++N+KPK GS I PG+DPK+++ F+DLL+K+F+LDP++R+TV +AL+HPFIT K
Sbjct: 877 RMIVNVKPKDFGSIIKGYPGEDPKILAHFRDLLDKMFILDPERRLTVSQALAHPFITGK 935
>AT3G53640.1 | chr3:19887007-19888935 REVERSE LENGTH=643
Length = 642
Score = 158 bits (399), Expect = 7e-40, Method: Composition-based stats.
Identities = 74/120 (61%), Positives = 96/120 (80%), Gaps = 1/120 (0%)
Query: 1 TGKILFDGSTNNDMLRLHMELKGPFPKKMLRKGAFTMQHFDQNLNFLARKKDPITKTVVN 60
+GKI+F GSTNNDMLRLHMELKGPFPKKMLRKGAF QHFD++L F A ++D +T +
Sbjct: 523 SGKIMFPGSTNNDMLRLHMELKGPFPKKMLRKGAFIDQHFDKDLCFYATEEDSVTGKTIR 582
Query: 61 RLLLNIKPKGVGSAISSCPGD-DPKMISSFKDLLEKIFVLDPKKRITVPEALSHPFITAK 119
R+++N+KPK +GS I D DPK++ F++LL+KIF LDP+KR+TV +AL+HPFIT K
Sbjct: 583 RIMVNVKPKDLGSVIRRRYEDEDPKVLVHFRNLLDKIFTLDPQKRLTVSQALAHPFITGK 642
>AT1G13350.2 | chr1:4572502-4576547 REVERSE LENGTH=789
Length = 788
Score = 154 bits (388), Expect = 1e-38, Method: Composition-based stats.
Identities = 73/120 (60%), Positives = 94/120 (78%), Gaps = 1/120 (0%)
Query: 1 TGKILFDGSTNNDMLRLHMELKGPFPKKMLRKGAFTMQHFDQNLNFLARKKDPITKTVVN 60
+GKI+F GSTNN+MLRLHMELKG FPKKMLRKGAF QHFD++L F A ++D +T+
Sbjct: 669 SGKIMFPGSTNNEMLRLHMELKGAFPKKMLRKGAFIDQHFDKDLCFYATEEDSVTRKTTK 728
Query: 61 RLLLNIKPKGVGSAISSCPGD-DPKMISSFKDLLEKIFVLDPKKRITVPEALSHPFITAK 119
R+++NIKPK GS I D D K++ F+DLL++IF+LDP+KRITV +AL+HPFIT K
Sbjct: 729 RMMVNIKPKEFGSVIKQRYKDEDSKLLVHFRDLLDRIFILDPQKRITVSQALAHPFITGK 788
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.139 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,732,934
Number of extensions: 106781
Number of successful extensions: 473
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 478
Number of HSP's successfully gapped: 3
Length of query: 119
Length of database: 11,106,569
Length adjustment: 85
Effective length of query: 34
Effective length of database: 8,776,209
Effective search space: 298391106
Effective search space used: 298391106
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 105 (45.1 bits)