BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0708000 Os03g0708000|AK105828
(163 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0708000 Phospholipase A2 family protein 227 3e-60
Os03g0261100 Phospholipase A2 family protein 123 7e-29
Os11g0546600 118 2e-27
>Os03g0708000 Phospholipase A2 family protein
Length = 163
Score = 227 bits (579), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 118/163 (72%), Positives = 118/163 (72%)
Query: 1 MARGGSFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNIGLQSAGDGASKAGLCSRTCE 60
MARGGSFS NIGLQSAGDGASKAGLCSRTCE
Sbjct: 1 MARGGSFSRLRLRAGVVVAAAAAALLLFAVVAPPAAALNIGLQSAGDGASKAGLCSRTCE 60
Query: 61 SDHCTTPPLLRYGKYCGILYSGCPGEQPCDELDACCMHHDNCVQAKNDYLSTXXXXXXXX 120
SDHCTTPPLLRYGKYCGILYSGCPGEQPCDELDACCMHHDNCVQAKNDYLST
Sbjct: 61 SDHCTTPPLLRYGKYCGILYSGCPGEQPCDELDACCMHHDNCVQAKNDYLSTACNEELLE 120
Query: 121 XXXXXXXGSSTFQGNKCMIDEVIDVISLVIEAAVVAGRLLHKP 163
GSSTFQGNKCMIDEVIDVISLVIEAAVVAGRLLHKP
Sbjct: 121 CLARLREGSSTFQGNKCMIDEVIDVISLVIEAAVVAGRLLHKP 163
>Os03g0261100 Phospholipase A2 family protein
Length = 153
Score = 123 bits (308), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 69/125 (55%), Positives = 78/125 (62%), Gaps = 4/125 (3%)
Query: 39 NIGLQSAGDGASKAGLCSRTCESDHCTTPPLLRYGKYCGILYSGCPGEQPCDELDACCMH 98
NIG G +K CSRTCES CT PLLRYGKYCGILYSGCPGE+PCD LDACCM
Sbjct: 27 NIG-DLLGSTPAKDQGCSRTCESQFCTIAPLLRYGKYCGILYSGCPGERPCDALDACCMV 85
Query: 99 HDNCVQAKN-DYLSTXXXXXXXXXXXXXXXGSSTFQGNKCMIDEVIDVISLVIEAAVVAG 157
HD+CV N DYL+T +TF GNKC + + VI VIE AV AG
Sbjct: 86 HDHCVDTHNDDYLNT--MCNENLLSCIDRVSGATFPGNKCNVGQTASVIRGVIETAVFAG 143
Query: 158 RLLHK 162
++LHK
Sbjct: 144 KILHK 148
>Os11g0546600
Length = 164
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 76/117 (64%), Gaps = 8/117 (6%)
Query: 55 CSRTCESDHC----TTPPLLRYGKYCGILYSGCPGEQPCDELDACCMHHDNCVQAK-NDY 109
CSRTCES+HC PL+RYGKYCG+ Y+GCPGE PCD LDACCM HD CVQA NDY
Sbjct: 48 CSRTCESEHCLGTYAQAPLMRYGKYCGVSYTGCPGEAPCDALDACCMLHDACVQATDNDY 107
Query: 110 LSTXXXXXXXXXXXXXXXGSS---TFQGNKCMIDEVIDVISLVIEAAVVAGRLLHKP 163
L+ ++ TF+GN+C + +V D I+ ++EAAV A R+LH+P
Sbjct: 108 LNMLCNQSLLDCVAAVRSPAARIRTFEGNQCNVTDVADEITSLVEAAVFAKRILHRP 164
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,527,201
Number of extensions: 143027
Number of successful extensions: 239
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 4
Length of query: 163
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 70
Effective length of database: 12,179,899
Effective search space: 852592930
Effective search space used: 852592930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 152 (63.2 bits)