BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0707300 Os03g0707300|AK066944
         (539 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0707300  Conserved hypothetical protein                     1051   0.0  
Os01g0108000  Conserved hypothetical protein                      155   8e-38

>Os03g0707300 Conserved hypothetical protein
          Length = 539

 Score = 1051 bits (2717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/539 (94%), Positives = 507/539 (94%)

Query: 1   MRDPFSAPVDFNNENHRAGNELTRTNMPLSVGDYGLQNGDATTFAVNTDTLVRHQLQGAS 60
           MRDPFSAPVDFNNENHRAGNELTRTNMPLSVGDYGLQNGDATTFAVNTDTLVRHQLQGAS
Sbjct: 1   MRDPFSAPVDFNNENHRAGNELTRTNMPLSVGDYGLQNGDATTFAVNTDTLVRHQLQGAS 60

Query: 61  LQNDLTAEDSITRLMDPETKGLYFRSRSQEEEILLLRKQIADASVKELQLLSEKHILERK 120
           LQNDLTAEDSITRLMDPETKGLYFRSRSQEEEILLLRKQIADASVKELQLLSEKHILERK
Sbjct: 61  LQNDLTAEDSITRLMDPETKGLYFRSRSQEEEILLLRKQIADASVKELQLLSEKHILERK 120

Query: 121 LFDLRMAVDEKQEDAISGALKQLSQKKGHVEENMRLANDLKGEEEELYFFTSSLLSMLAE 180
           LFDLRMAVDEKQEDAISGALKQLSQKKGHVEENMRLANDLKGEEEELYFFTSSLLSMLAE
Sbjct: 121 LFDLRMAVDEKQEDAISGALKQLSQKKGHVEENMRLANDLKGEEEELYFFTSSLLSMLAE 180

Query: 181 YNVRPPQINASAITAGTKRLYHQMQWKIKYLNDSLGEITQPGHIYNNPNHQQATPLRHEP 240
           YNVRPPQINASAITAGTKRLYHQMQWKIKYLNDSLGEITQPGHIYNNPNHQQATPLRHEP
Sbjct: 181 YNVRPPQINASAITAGTKRLYHQMQWKIKYLNDSLGEITQPGHIYNNPNHQQATPLRHEP 240

Query: 241 SSSYNTDATRNNFHQYAQDPNDRNTGQMYHGSNYHQEIVAATPSNYFEENNGPREVRLDD 300
           SSSYNTDATRNNFHQYAQDPNDRNTGQMYHGSNYHQEIVAATPSNYFEENNGPREVRLDD
Sbjct: 241 SSSYNTDATRNNFHQYAQDPNDRNTGQMYHGSNYHQEIVAATPSNYFEENNGPREVRLDD 300

Query: 301 SQFYRQDNQEYSADDDPLPGIEGFQIVGEPRPGFTLTACGFPTNGTTLCNFQWVRYLDNG 360
           SQFYRQDNQEYSADDDPLPGIEGFQIVGEPRPGFTLTACGFPTNGTTLCNFQWVRYLDNG
Sbjct: 301 SQFYRQDNQEYSADDDPLPGIEGFQIVGEPRPGFTLTACGFPTNGTTLCNFQWVRYLDNG 360

Query: 361 TRQSIEGATMXXXXXXXXXXXXXXXXXCTPMDDNTRQGELVTEYANNGSKITCDPEMQNT 420
           TRQSIEGATM                 CTPMDDNTRQGELVTEYANNGSKITCDPEMQNT
Sbjct: 361 TRQSIEGATMYDYVVTADDVDTLLAVDCTPMDDNTRQGELVTEYANNGSKITCDPEMQNT 420

Query: 421 IDMHISNGRAHFNLLVLGYSSDEWELAILTLKRTGYHIKVKDEVLTEEKYSSNLQTKIPN 480
           IDMHISNGRAHFNLLVLGYSSDEWELAILTLKRTGYHIKVKDEVLTEEKYSSNLQTKIPN
Sbjct: 421 IDMHISNGRAHFNLLVLGYSSDEWELAILTLKRTGYHIKVKDEVLTEEKYSSNLQTKIPN 480

Query: 481 GRTTQFVLVSSGGVNIPFNTQGISEPNNEXXXXXXXXXXXXXXXTFQSKALDAKRKGKV 539
           GRTTQFVLVSSGGVNIPFNTQGISEPNNE               TFQSKALDAKRKGKV
Sbjct: 481 GRTTQFVLVSSGGVNIPFNTQGISEPNNEDSDVRLRDLIVLVLRTFQSKALDAKRKGKV 539



>Os01g0108000 Conserved hypothetical protein
          Length = 758

 Score =  155 bits (392), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 78/185 (42%), Positives = 104/185 (56%), Gaps = 2/185 (1%)

Query: 312 SADDDPLPGIEGFQIVGEPRPGFTLTACGFPTNGTTLCNFQWVRYLDNGTRQSIEGATMX 371
           +A+DDPLPGIEG +I GE  PG  L A G+ TNGTT CNF+WVR+L++G+   IEGA   
Sbjct: 533 AAEDDPLPGIEGLRITGEAFPGRELQASGYSTNGTTSCNFEWVRHLEDGSVNFIEGARQP 592

Query: 372 XXXXXXXXXXXXXXXXCTPMDDNTRQGELVTEYANNGSKITCDPEMQNTIDMHISNGRAH 431
                             P+DD  R+GE+V  YAN+  KITCDPE +  I   +  G   
Sbjct: 593 NYLVTADDVDTLLAIEVQPLDDRKRKGEIVRFYANDQRKITCDPETKELIKRTLETGHVS 652

Query: 432 FNLLVLGYSSDEWELAILTLKRTGYHIKVKDE--VLTEEKYSSNLQTKIPNGRTTQFVLV 489
           + + +     D WE AIL +KR GY IK   +  V+  EK+       IP GR T+F++ 
Sbjct: 653 YEVQLPVKFLDMWEPAILAIKREGYSIKCTGQRGVVLTEKFQQATSINIPYGRPTEFLIT 712

Query: 490 SSGGV 494
           S+ GV
Sbjct: 713 SADGV 717




 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 89/137 (64%), Gaps = 1/137 (0%)

Query: 82  LYFRSRSQEEEILLLRKQIADASVKELQLLSEKHILERKLFDLRMAVDEKQEDAISGALK 141
           L  + +  EEEI  LRK +AD S+K+ ++L +K++LER++  +RMA D++Q+D I  A K
Sbjct: 209 LTAKIKENEEEIAQLRKHLADYSLKQARILDDKYMLERRIAQMRMAFDQQQQDLIDAASK 268

Query: 142 QLSQKKGHVEENMRLANDLKGEEEELYFFTSSLLSMLAEY-NVRPPQINASAITAGTKRL 200
            LS ++  +EEN+RLA  ++  ++E   F SSLL +L+EY N++P  ++A +I +  K L
Sbjct: 269 ALSYRQDIIEENIRLAYAVQAAQQERTTFISSLLPLLSEYENLQPSVLDAQSIVSNLKVL 328

Query: 201 YHQMQWKIKYLNDSLGE 217
           +  +Q ++    + L E
Sbjct: 329 FKHLQEQLIITEEKLKE 345



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.131    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,842,860
Number of extensions: 752757
Number of successful extensions: 1442
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1439
Number of HSP's successfully gapped: 3
Length of query: 539
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 433
Effective length of database: 11,501,117
Effective search space: 4979983661
Effective search space used: 4979983661
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)