Os01g0108000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0108000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.75 | 0.214 | 9.76 | 0.772 | 0.352 | -0.796 | -0.123 | 1.83 | 0.369 | 23.3 | 20.05 | 648 | -- | -- |
| 23.2 | 0.224 | 9.8 | 0.409 | 0.315 | -0.63 | 0.000893 | -- | 0.251 | 1.55 | 17.57 | 1987 | -- | -- |
| 20.76 | 0.212 | 9.76 | 0.758 | 0.303 | -0.823 | -- | 1.88 | 0.368 | 22.4 | 20.31 | 491 | -- | -- |
| 22.9 | 0.223 | 9.8 | 0.452 | 0.336 | -0.7 | -- | -- | 0.27 | 1.45 | 14.4 | 2200 | -- | -- |
| 22.98 | 0.224 | 9.78 | 0.529 | -- | -0.817 | -- | 0.979 | 0.308 | -- | 18.05 | 225 | -- | -- |
| 31.79 | 0.264 | 9.83 | 0.199 | 0.284 | -- | 0.0164 | -- | 0.133 | 2.18 | -- | -- | -- | -- |
| 31.79 | 0.264 | 9.83 | 0.199 | 0.284 | -- | -- | -- | 0.133 | 2.19 | -- | -- | -- | -- |
| 23.67 | 0.227 | 9.8 | 0.392 | -- | -0.948 | -- | -- | 0.266 | -- | 14.03 | 64 | -- | -- |
| 26.63 | 0.24 | 9.82 | -- | 0.317 | -0.667 | -- | -- | 0.203 | 0.406 | 4.867 | 643 | -- | -- |
| 36.6 | 0.283 | 9.83 | 0.211 | -- | -- | -- | -- | 0.14 | -- | -- | -- | -- | -- |
| 32.83 | 0.268 | 9.83 | -- | 0.288 | -- | -- | -- | 0.111 | 2.2 | -- | -- | -- | -- |
| 27.38 | 0.244 | 9.81 | -- | -- | -0.709 | -- | -- | 0.211 | -- | 17.86 | 26 | -- | -- |
| 37.77 | 0.287 | 9.83 | -- | -- | -- | -- | -- | 0.116 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.90 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 11 | 19.90 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 12 | 19.91 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 15 | 20.11 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 19 | 20.13 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 27 | 20.56 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 22 |
| 40 | 20.61 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 41 | 20.61 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 21 |
| 43 | 20.62 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 52 | 20.64 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 53 | 20.64 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 64 | 20.71 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 6 |
| 70 | 20.74 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 21 |
| 89 | 20.80 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 102 | 20.82 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 103 | 20.82 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 23 |
| 117 | 20.86 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 134 | 20.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 148 | 20.91 | temperature | 20 | 1440 | > th | dose dependent | sin | 16 | NA |
| 157 | 20.91 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 23 |
| 160 | 20.92 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 18 |
| 178 | 20.94 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 188 | 20.95 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 202 | 20.96 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 323 | 21.04 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 459 | 21.11 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 668 | 21.18 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 710 | 21.19 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 712 | 21.19 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 752 | 21.20 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 794 | 21.21 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 11 |
| 825 | 21.22 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 909 | 21.25 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 911 | 21.25 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 4 |