BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0108000 Os01g0108000|AK100813
(758 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0108000 Conserved hypothetical protein 1437 0.0
Os03g0707300 Conserved hypothetical protein 199 9e-51
>Os01g0108000 Conserved hypothetical protein
Length = 758
Score = 1437 bits (3721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 700/758 (92%), Positives = 700/758 (92%)
Query: 1 MDALAGRLXXXXXXXXXXXXXXXXTDGANADHLLHVMRAVEGAEATIRNQLEENNRLKEE 60
MDALAGRL TDGANADHLLHVMRAVEGAEATIRNQLEENNRLKEE
Sbjct: 1 MDALAGRLAAASVSDHPSSSSAAATDGANADHLLHVMRAVEGAEATIRNQLEENNRLKEE 60
Query: 61 LMQKTRQLQRIREDXXXXXXXXXXXXDRRSFVATKMXXXXXXXXXXXXXXXXTPSALHHN 120
LMQKTRQLQRIRED DRRSFVATKM TPSALHHN
Sbjct: 61 LMQKTRQLQRIREDAASQASSSGVAQDRRSFVATKMDASRSPASAASSDNSRTPSALHHN 120
Query: 121 GAFESGEPSMQQTIRQNNALSNGASKRSSGEQPALDSAAVSQFSTPSSHSLSPTRHRKEG 180
GAFESGEPSMQQTIRQNNALSNGASKRSSGEQPALDSAAVSQFSTPSSHSLSPTRHRKEG
Sbjct: 121 GAFESGEPSMQQTIRQNNALSNGASKRSSGEQPALDSAAVSQFSTPSSHSLSPTRHRKEG 180
Query: 181 EHDPRLNLAGQGLLPASEMASNMSWKHDLTAKIKENEEEIAQLRKHLADYSLKQARILDD 240
EHDPRLNLAGQGLLPASEMASNMSWKHDLTAKIKENEEEIAQLRKHLADYSLKQARILDD
Sbjct: 181 EHDPRLNLAGQGLLPASEMASNMSWKHDLTAKIKENEEEIAQLRKHLADYSLKQARILDD 240
Query: 241 KYMLERRIAQMRMAFDQQQQDLIDAASKALSYRQDIIEENIRLAYAVQAAQQERTTFISS 300
KYMLERRIAQMRMAFDQQQQDLIDAASKALSYRQDIIEENIRLAYAVQAAQQERTTFISS
Sbjct: 241 KYMLERRIAQMRMAFDQQQQDLIDAASKALSYRQDIIEENIRLAYAVQAAQQERTTFISS 300
Query: 301 LLPLLSEYENLQPSVLDAQSIVSNLKVLFKHLQEQLIITEEKLKESRYQITPWQTELAND 360
LLPLLSEYENLQPSVLDAQSIVSNLKVLFKHLQEQLIITEEKLKESRYQITPWQTELAND
Sbjct: 301 LLPLLSEYENLQPSVLDAQSIVSNLKVLFKHLQEQLIITEEKLKESRYQITPWQTELAND 360
Query: 361 ATLPVHSPTDPLGKALVTSNKSNLDIVTQTPYPHIQSPMSSPVQVRGDWGVAGNKNRQVI 420
ATLPVHSPTDPLGKALVTSNKSNLDIVTQTPYPHIQSPMSSPVQVRGDWGVAGNKNRQVI
Sbjct: 361 ATLPVHSPTDPLGKALVTSNKSNLDIVTQTPYPHIQSPMSSPVQVRGDWGVAGNKNRQVI 420
Query: 421 PTDVPPRNVDHGDMGRNXXXXXXXXXXXXXXHDPHSVPLDFEPENQNPPFKHLSRSDVSD 480
PTDVPPRNVDHGDMGRN HDPHSVPLDFEPENQNPPFKHLSRSDVSD
Sbjct: 421 PTDVPPRNVDHGDMGRNSLSSRRDVSSQVSQHDPHSVPLDFEPENQNPPFKHLSRSDVSD 480
Query: 481 ASEGAEVQHAREHSAHWGHGDSVNLVSGIEDTNPSYPYLPTVLEEPGSSFSEAAEDDPLP 540
ASEGAEVQHAREHSAHWGHGDSVNLVSGIEDTNPSYPYLPTVLEEPGSSFSEAAEDDPLP
Sbjct: 481 ASEGAEVQHAREHSAHWGHGDSVNLVSGIEDTNPSYPYLPTVLEEPGSSFSEAAEDDPLP 540
Query: 541 GIEGLRITGEAFPGRELQASGYSTNGTTSCNFEWVRHLEDGSVNFIEGARQPNYLVTADD 600
GIEGLRITGEAFPGRELQASGYSTNGTTSCNFEWVRHLEDGSVNFIEGARQPNYLVTADD
Sbjct: 541 GIEGLRITGEAFPGRELQASGYSTNGTTSCNFEWVRHLEDGSVNFIEGARQPNYLVTADD 600
Query: 601 VDTLLAIEVQPLDDRKRKGEIVRFYANDQRKITCDPETKELIKRTLETGHVSYEVQLPVK 660
VDTLLAIEVQPLDDRKRKGEIVRFYANDQRKITCDPETKELIKRTLETGHVSYEVQLPVK
Sbjct: 601 VDTLLAIEVQPLDDRKRKGEIVRFYANDQRKITCDPETKELIKRTLETGHVSYEVQLPVK 660
Query: 661 FLDMWEPAILAIKREGYSIKCTGQRGVVLTEKFQQATSINIPYGRPTEFLITSADGVEYN 720
FLDMWEPAILAIKREGYSIKCTGQRGVVLTEKFQQATSINIPYGRPTEFLITSADGVEYN
Sbjct: 661 FLDMWEPAILAIKREGYSIKCTGQRGVVLTEKFQQATSINIPYGRPTEFLITSADGVEYN 720
Query: 721 LKPAENALPRDTIVLVLRLFRIMAVEKRRGRKKSLFFK 758
LKPAENALPRDTIVLVLRLFRIMAVEKRRGRKKSLFFK
Sbjct: 721 LKPAENALPRDTIVLVLRLFRIMAVEKRRGRKKSLFFK 758
>Os03g0707300 Conserved hypothetical protein
Length = 539
Score = 199 bits (505), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 104/229 (45%), Positives = 140/229 (61%), Gaps = 12/229 (5%)
Query: 533 AAEDDPLPGIEGLRITGEAFPGRELQASGYSTNGTTSCNFEWVRHLEDGSVNFIEGARQP 592
+A+DDPLPGIEG +I GE PG L A G+ TNGTT CNF+WVR+L++G+ IEGA
Sbjct: 312 SADDDPLPGIEGFQIVGEPRPGFTLTACGFPTNGTTLCNFQWVRYLDNGTRQSIEGATMY 371
Query: 593 NYLVTADDVDTLLAIEVQPLDDRKRKGEIVRFYANDQRKITCDPETKELIKRTLETGHVS 652
+Y+VTADDVDTLLA++ P+DD R+GE+V YAN+ KITCDPE + I + G
Sbjct: 372 DYVVTADDVDTLLAVDCTPMDDNTRQGELVTEYANNGSKITCDPEMQNTIDMHISNGRAH 431
Query: 653 YEVQLPVKFLDMWEPAILAIKREGYSIKCTGQRGVVLTEKFQQATSINIPYGRPTEFLIT 712
+ + + D WE AIL +KR GY IK + V+ EK+ IP GR T+F++
Sbjct: 432 FNLLVLGYSSDEWELAILTLKRTGYHIKVKDE--VLTEEKYSSNLQTKIPNGRTTQFVLV 489
Query: 713 SADGVEYNLKPAENALP---------RDTIVLVLRLFRIMAVE-KRRGR 751
S+ GV + P RD IVLVLR F+ A++ KR+G+
Sbjct: 490 SSGGVNIPFNTQGISEPNNEDSDVRLRDLIVLVLRTFQSKALDAKRKGK 538
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 89/137 (64%), Gaps = 1/137 (0%)
Query: 209 LTAKIKENEEEIAQLRKHLADYSLKQARILDDKYMLERRIAQMRMAFDQQQQDLIDAASK 268
L + + EEEI LRK +AD S+K+ ++L +K++LER++ +RMA D++Q+D I A K
Sbjct: 82 LYFRSRSQEEEILLLRKQIADASVKELQLLSEKHILERKLFDLRMAVDEKQEDAISGALK 141
Query: 269 ALSYRQDIIEENIRLAYAVQAAQQERTTFISSLLPLLSEYENLQPSVLDAQSIVSNLKVL 328
LS ++ +EEN+RLA ++ ++E F SSLL +L+EY N++P ++A +I + K L
Sbjct: 142 QLSQKKGHVEENMRLANDLKGEEEELYFFTSSLLSMLAEY-NVRPPQINASAITAGTKRL 200
Query: 329 FKHLQEQLIITEEKLKE 345
+ +Q ++ + L E
Sbjct: 201 YHQMQWKIKYLNDSLGE 217
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.130 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 23,833,902
Number of extensions: 1008139
Number of successful extensions: 2444
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2441
Number of HSP's successfully gapped: 3
Length of query: 758
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 650
Effective length of database: 11,396,689
Effective search space: 7407847850
Effective search space used: 7407847850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 160 (66.2 bits)