BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0705800 Os03g0705800|Os03g0705800
         (424 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0705800  Conserved hypothetical protein                      543   e-154
Os03g0261800  Conserved hypothetical protein                       69   7e-12

>Os03g0705800 Conserved hypothetical protein
          Length = 424

 Score =  543 bits (1398), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 287/424 (67%), Positives = 287/424 (67%)

Query: 1   MPAFEPSTWLRAAAENTYSKPEVAVDDRPAQADIWNAIQADVVDKSATTGXXXXXXXPYV 60
           MPAFEPSTWLRAAAENTYSKPEVAVDDRPAQADIWNAIQADVVDKSATTG       PYV
Sbjct: 1   MPAFEPSTWLRAAAENTYSKPEVAVDDRPAQADIWNAIQADVVDKSATTGAKKAAAKPYV 60

Query: 61  HPLVRRSSSLMSQKSLEVCTESLGSETGSGDFTASLDDVDMASLFGAPAAPASKRADQAA 120
           HPLVRRSSSLMSQKSLEVCTESLGSETGSGDFTASLDDVDMASLFGAPAAPASKRADQAA
Sbjct: 61  HPLVRRSSSLMSQKSLEVCTESLGSETGSGDFTASLDDVDMASLFGAPAAPASKRADQAA 120

Query: 121 EDSFWQQSAAPEEAWERKELAAVNYHCSGGTXXXXXXXXXXXXXXXXXDAPCLQMRPRRQ 180
           EDSFWQQSAAPEEAWERKELAAVNYHCSGGT                 DAPCLQMRPRRQ
Sbjct: 121 EDSFWQQSAAPEEAWERKELAAVNYHCSGGTRSPPRSFPPPLPSMSSRDAPCLQMRPRRQ 180

Query: 181 DGRLIVDAVVVRPRGYLHARRQGGRLLLSFVDCXXXXXXXXXXXXXXXXXXPYFPVVDAK 240
           DGRLIVDAVVVRPRGYLHARRQGGRLLLSFVDC                  PYFPVVDAK
Sbjct: 181 DGRLIVDAVVVRPRGYLHARRQGGRLLLSFVDCSAREQSAASKAAVATEKAPYFPVVDAK 240

Query: 241 LDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTQPQTPTAAKVHRSTLVINKFV 300
           LDQ                                  STQPQTPTAAKVHRSTLVINKFV
Sbjct: 241 LDQDEEVAAEVEEDDEVEEEEEEVEVVDRGTVVEVKVSTQPQTPTAAKVHRSTLVINKFV 300

Query: 301 GSTPLTVADLQPRCNXXXXXXXXXXXXXXXXXXXXXLRRVPXXXXXXXXXXXXXXXXXXX 360
           GSTPLTVADLQPRCN                     LRRVP                   
Sbjct: 301 GSTPLTVADLQPRCNADAACAAAAAAEATTDAPAPALRRVPSSTSTTTLAAAVAVASTST 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXTKQLLLFTSRCRDKQELLQSVRQCRQLRQKPLFILEPYC 420
                                TKQLLLFTSRCRDKQELLQSVRQCRQLRQKPLFILEPYC
Sbjct: 361 DGDDDDDEPHHPPGAAAPAADTKQLLLFTSRCRDKQELLQSVRQCRQLRQKPLFILEPYC 420

Query: 421 IATS 424
           IATS
Sbjct: 421 IATS 424



>Os03g0261800 Conserved hypothetical protein
          Length = 394

 Score = 68.9 bits (167), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/155 (40%), Positives = 76/155 (49%), Gaps = 31/155 (20%)

Query: 58  PYVHPLVRRSSSLMSQKSLEVCTESLGSETGSGDFTASLDDVDMASLFGAPAAPASKRAD 117
           PYVHPLVRRSSSL+SQKSLE+CTESLGSETGS  F+    D D ++    PA  +   +D
Sbjct: 88  PYVHPLVRRSSSLLSQKSLEICTESLGSETGSDGFS----DADGSTDRSCPA--SDDDSD 141

Query: 118 QAAEDSFWQQSAAPEEAWERKELAAVNYHCSGGTXXXXXXXXXXXXXXXXXDAPCLQMRP 177
             AE+   + S           LA                               +QM  
Sbjct: 142 GGAEEVAARASPPRAFPPPLPSLARRTVG-------------------------AVQMTQ 176

Query: 178 RRQDGRLIVDAVVVRPRGYLHARRQGGRLLLSFVD 212
            R+DGRL+V AV V       A+R GGRLLLSF D
Sbjct: 177 DRRDGRLVVKAVPVPSATLFRAQRCGGRLLLSFAD 211



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.131    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,045,243
Number of extensions: 322026
Number of successful extensions: 873
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 869
Number of HSP's successfully gapped: 3
Length of query: 424
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 320
Effective length of database: 11,605,545
Effective search space: 3713774400
Effective search space used: 3713774400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)