BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0695500 Os03g0695500|Os03g0695500
(398 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0695500 Protein of unknown function DUF1517 family pro... 455 e-128
Os08g0119100 166 4e-41
Os08g0119300 Protein of unknown function DUF1517 family pro... 162 4e-40
Os08g0119200 145 4e-35
>Os03g0695500 Protein of unknown function DUF1517 family protein
Length = 398
Score = 455 bits (1170), Expect = e-128, Method: Compositional matrix adjust.
Identities = 228/245 (93%), Positives = 228/245 (93%)
Query: 154 RGGYSAAPFYSPSPFVSVGPAXXXXXXXXXXXXXXXXXAAFLYLAGFLSDSSGGSVLTET 213
RGGYSAAPFYSPSPFVSVGPA AAFLYLAGFLSDSSGGSVLTET
Sbjct: 154 RGGYSAAPFYSPSPFVSVGPAVGIGFGGSSFFFVLMGFAAFLYLAGFLSDSSGGSVLTET 213
Query: 214 DKTTVLKLQVGLLGMARSFQKELDQIAEKADTSTPAGLSYVLTETTLALLRHPDCCISAY 273
DKTTVLKLQVGLLGMARSFQKELDQIAEKADTSTPAGLSYVLTETTLALLRHPDCCISAY
Sbjct: 214 DKTTVLKLQVGLLGMARSFQKELDQIAEKADTSTPAGLSYVLTETTLALLRHPDCCISAY 273
Query: 274 SSVDVKRSIDDGEKRFNQLSIEERGKFDEETLVNVNSIKRQKAGSQRSSGFSNEYIVITI 333
SSVDVKRSIDDGEKRFNQLSIEERGKFDEETLVNVNSIKRQKAGSQRSSGFSNEYIVITI
Sbjct: 274 SSVDVKRSIDDGEKRFNQLSIEERGKFDEETLVNVNSIKRQKAGSQRSSGFSNEYIVITI 333
Query: 334 LVAAEGVHKLPSINGSGDLKTALQKLGAIPSRKILAVEVLWTPQNENDTLSERELLEDYP 393
LVAAEGVHKLPSINGSGDLKTALQKLGAIPSRKILAVEVLWTPQNENDTLSERELLEDYP
Sbjct: 334 LVAAEGVHKLPSINGSGDLKTALQKLGAIPSRKILAVEVLWTPQNENDTLSERELLEDYP 393
Query: 394 LLRPL 398
LLRPL
Sbjct: 394 LLRPL 398
>Os08g0119100
Length = 403
Score = 166 bits (419), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 88/187 (47%), Positives = 120/187 (64%), Gaps = 4/187 (2%)
Query: 216 TTVLKLQVGLLGMARSFQKELDQIAEKADTSTPAGLSYVLTETTLALLRHPDCCISAYSS 275
TTV+KLQV G+ + Q++L+ IA K DTS + ++LTET +L RH D CIS+ S
Sbjct: 138 TTVVKLQVAFRGLTKIIQRDLNGIARKVDTSNRSWDKFMLTETICSLNRHKDICISSSLS 197
Query: 276 VDVKRSI----DDGEKRFNQLSIEERGKFDEETLVNVNSIKRQKAGSQRSSGFSNEYIVI 331
D+++ + D EK F+++SIEER KFDEETL NV IK +K + G NEY+V+
Sbjct: 198 ADLQKRLLFWGDCWEKHFDKISIEERSKFDEETLYNVQGIKMKKKYLKPGLGKENEYLVL 257
Query: 332 TILVAAEGVHKLPSINGSGDLKTALQKLGAIPSRKILAVEVLWTPQNENDTLSERELLED 391
TIL+AAEG + P + + DL T L L +I + KI ++VLWTPQ D L E LL+D
Sbjct: 258 TILLAAEGKLEFPIVRSASDLTTVLGILNSIHANKIEGIQVLWTPQKIGDILPEERLLKD 317
Query: 392 YPLLRPL 398
YP L+PL
Sbjct: 318 YPYLKPL 324
>Os08g0119300 Protein of unknown function DUF1517 family protein
Length = 411
Score = 162 bits (410), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 85/185 (45%), Positives = 120/185 (64%), Gaps = 4/185 (2%)
Query: 217 TVLKLQVGLLGMA--RSFQKELDQIAEKADTSTPAGLSYVLTETTLALLRHPDCCISAYS 274
+V+KLQ+ L G+A +SFQK+L++IAE+ S+ ++L++T +L RH D CIS
Sbjct: 226 SVVKLQIALGGVAAAKSFQKDLNRIAERVQGSSRRWYKFILSDTISSLHRHKDYCISTSL 285
Query: 275 SVDVKRSIDDGEKRFNQLSIEERGKFDEETLVNVNSIKRQKAGSQRSSGFSNEYIVITIL 334
SVD+K S D F ++S+EERGKFDEETL N+ +KR K S + G NEYIV+TIL
Sbjct: 286 SVDIKDS-DSWNGHFKKISLEERGKFDEETLSNLEGVKRNKEYSTKMDGSKNEYIVLTIL 344
Query: 335 VAAEGVHKLPS-INGSGDLKTALQKLGAIPSRKILAVEVLWTPQNENDTLSERELLEDYP 393
VA +G P I + DLK AL KL + P + + VLW PQ+++D LS+ + +DYP
Sbjct: 345 VATDGTMDFPKLITNAADLKVALTKLYSTPETGLEGIHVLWAPQDKDDILSKERMQKDYP 404
Query: 394 LLRPL 398
L+PL
Sbjct: 405 YLKPL 409
>Os08g0119200
Length = 392
Score = 145 bits (367), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 85/189 (44%), Positives = 112/189 (59%), Gaps = 3/189 (1%)
Query: 210 LTETDKTTVLKLQVGLLGMARSFQKELDQIAEKADTSTPAGLSYVLTETTLALLRHPDCC 269
L KTTV+KLQV L +A++ QK+L+ IA K DT+ A L + + L P
Sbjct: 157 LASNQKTTVVKLQVALQALAKTMQKDLNTIAAKVDTTKTASLQIHVNGDDMFL--EPSER 214
Query: 270 ISAYSSVDVKRSIDDGEKRFNQLSIEERGKFDEETLVNVNSIKRQKAGSQRSSGFSNEYI 329
+ S+ V ID E+ F+++SIEER K DEETL NV IK K S+ EYI
Sbjct: 215 LLVLFSLIVDE-IDSWEEHFDKISIEERSKTDEETLFNVEGIKISKKYSKNPESCRKEYI 273
Query: 330 VITILVAAEGVHKLPSINGSGDLKTALQKLGAIPSRKILAVEVLWTPQNENDTLSERELL 389
V+TI++AAEG K P I + DL+ L L I + +I V++LWTPQ E+D LSE LL
Sbjct: 274 VLTIILAAEGKLKFPQIRSADDLRLVLGMLNGIHASEIKGVQILWTPQEEDDALSEERLL 333
Query: 390 EDYPLLRPL 398
+DYP LRPL
Sbjct: 334 KDYPYLRPL 342
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.133 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,542,819
Number of extensions: 285403
Number of successful extensions: 629
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 624
Number of HSP's successfully gapped: 4
Length of query: 398
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 295
Effective length of database: 11,657,759
Effective search space: 3439038905
Effective search space used: 3439038905
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)