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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0119300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1517 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.0451) R2 : 2.34e-06
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0031 (0.095) R2dN8 : 3.02e-06 R2N8 : 2.34e-06
σ : 0.849
deviance : 331.18
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
316.37 0.836 2.92 0.341 0.274 0.276 -0.148 -1.83 0.057 2.18 1012 59 -- --
321.5 0.842 2.93 0.267 0.25 0.694 -0.122 -- 0.0387 2.44 1012 17 -- --
315.88 0.828 2.91 0.339 0.271 0.279 -- -2.17 0.0595 2.27 1012 76 -- --
321.56 0.841 2.93 0.27 0.251 0.694 -- -- 0.0393 2.52 1012 17 -- --
320.16 0.833 2.91 0.347 -- 0.324 -- -2.11 0.0635 -- 1012 71 -- --
325.62 0.846 2.93 0.209 0.265 -- -0.126 -- 0.0146 2.27 -- -- -- --
325.68 0.845 2.93 0.213 0.266 -- -- -- 0.0153 2.33 -- -- -- --
325.24 0.844 2.92 0.284 -- 0.733 -- -- 0.0469 -- 1012 17 -- --
323.44 0.842 2.93 -- 0.257 0.627 -- -- 0.0075 2.51 1012 21 -- --
329.86 0.849 2.93 0.224 -- -- -- -- 0.0218 -- -- -- -- --
326.87 0.846 2.94 -- 0.27 -- -- -- -0.00844 2.35 -- -- -- --
327.32 0.843 2.93 -- -- 0.663 -- -- 0.0139 -- 1012 28 -- --
331.18 0.849 2.93 -- -- -- -- -- -0.0031 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 308.00 wind 5.0 90 > th dose independent rect. 12 2
2 308.22 wind 5.0 90 > th dose dependent rect. 12 2
5 309.57 wind 1.0 10 < th dose independent rect. 8 1
7 309.57 wind 1.0 10 < th dose dependent rect. 8 1
9 309.63 temperature 25.0 90 < th dose dependent rect. 12 1
13 310.97 wind 5.0 10 > th dose independent rect. 13 1
14 311.01 temperature 25.0 90 < th dose independent rect. 12 1
36 312.78 radiation 1.0 43200 < th dose dependent rect. 3 1
43 313.69 wind 5.0 10 > th dose dependent rect. 13 1
45 314.06 temperature 15.0 720 > th dose independent rect. 17 6
47 314.17 temperature 15.0 1440 > th dose independent rect. 13 2
48 314.23 temperature 30.0 10 < th dose dependent rect. 13 1
57 314.51 temperature 15.0 720 > th dose independent rect. 11 18
61 314.78 wind 1.0 90 < th dose independent rect. 6 3
62 314.79 wind 1.0 90 < th dose independent rect. 6 1
70 314.98 radiation 1.0 43200 < th dose dependent rect. 24 1
72 315.06 wind 1.0 270 < th dose dependent rect. 24 5
73 315.12 wind 1.0 270 < th dose dependent rect. 24 7
77 315.16 temperature 15.0 720 > th dose independent rect. 5 20
81 315.21 atmosphere 1000.0 10 > th dose dependent rect. 13 1
83 315.28 temperature 15.0 30 > th dose independent rect. 3 23
96 315.50 temperature 15.0 720 > th dose independent rect. 13 13
103 315.65 wind 1.0 270 < th dose dependent rect. 16 15
109 315.69 radiation 1.0 43200 < th dose dependent rect. 24 4
121 315.88 temperature 15.0 720 > th dose independent rect. 14 11
122 315.88 wind 1.0 270 < th dose dependent rect. 4 1
126 316.04 precipitation 0.1 10 > th dose independent rect. 1 1
138 316.04 precipitation 0.1 10 > th dose dependent rect. 1 1
152 316.12 temperature 15.0 90 > th dose independent rect. 5 23
155 316.14 temperature 15.0 720 > th dose independent rect. 9 14
160 316.21 temperature 25.0 1440 < th dose dependent rect. 8 1
162 316.23 radiation 1.0 90 > th dose independent rect. 14 22
165 316.28 temperature 15.0 4320 < th dose dependent rect. 2 1
172 316.35 atmosphere 1000.0 30 > th dose independent rect. 12 2
173 316.36 temperature 10.0 90 > th dose dependent rect. 5 23
174 316.38 temperature 10.0 1440 > th dose dependent rect. 8 2
177 316.40 radiation 30.0 90 > th dose independent rect. 12 1
184 316.44 temperature 15.0 270 > th dose independent rect. 11 23
192 316.54 wind 1.0 10 > th dose independent rect. 24 11
196 316.56 radiation 1.0 43200 < th dose dependent rect. 20 5
197 316.57 temperature 15.0 270 > th dose independent rect. 21 11
202 316.58 radiation 1.0 270 < th dose independent rect. 8 1
203 316.58 temperature 15.0 720 > th dose independent rect. 11 10
205 316.58 radiation 1.0 270 < th dose dependent rect. 8 1
206 316.58 radiation 1.0 43200 < th dose dependent rect. 20 8
207 316.59 temperature 15.0 1440 > th dose independent rect. 6 7
212 316.62 wind 1.0 270 < th dose dependent rect. 4 3
219 316.67 atmosphere 1010.0 90 < th dose independent rect. 5 23
221 316.68 humidity 90.0 90 < th dose independent rect. 14 22
223 316.69 wind 1.0 90 < th dose independent rect. 24 9
248 316.81 temperature 15.0 720 > th dose independent rect. 19 7
254 316.84 temperature 15.0 4320 < th dose dependent rect. 1 3
257 316.86 atmosphere 995.0 43200 > th dose independent rect. 12 1
267 316.94 temperature 10.0 720 > th dose dependent rect. 3 14
271 316.96 wind 1.0 90 > th dose independent rect. 14 22
273 316.96 radiation 1.0 90 > th dose dependent rect. 14 22
275 316.97 radiation 20.0 4320 < th dose independent rect. 5 1
277 316.98 temperature 15.0 720 > th dose independent rect. 3 23
282 317.00 precipitation 0.1 270 > th dose independent rect. 21 3
283 317.00 atmosphere 1015.0 4320 > th dose dependent rect. 11 2
284 317.00 precipitation 0.1 270 > th dose dependent rect. 21 3
287 317.03 atmosphere 995.0 43200 < th dose independent rect. 7 8
290 317.03 atmosphere 1000.0 90 > th dose independent rect. 12 21
291 317.03 atmosphere 1010.0 10 > th dose dependent sin 21 NA
305 317.09 atmosphere 1010.0 10 > th dose dependent sin 4 NA
312 317.10 temperature 15.0 30 > th dose dependent rect. 6 16
314 317.11 atmosphere 1015.0 4320 > th dose independent rect. 12 1
322 317.12 temperature 10.0 720 > th dose dependent rect. 5 12
325 317.14 atmosphere 1015.0 4320 < th dose independent rect. 13 1
327 317.14 wind 1.0 90 < th dose dependent rect. 24 1
334 317.16 atmosphere 995.0 43200 > th dose independent rect. 6 9
343 317.19 humidity 70.0 4320 > th dose independent rect. 19 5
347 317.19 temperature 20.0 720 > th dose dependent rect. 6 1
350 317.20 temperature 15.0 720 > th dose independent rect. 20 5
355 317.22 humidity 70.0 4320 > th dose independent rect. 19 11
370 317.26 temperature 15.0 720 > th dose independent rect. 11 8
371 317.26 humidity 70.0 4320 > th dose independent rect. 19 8
375 317.27 temperature 15.0 270 > th dose independent rect. 18 13
379 317.27 temperature 10.0 30 > th dose dependent rect. 3 23
380 317.27 temperature 10.0 90 > th dose dependent rect. 12 23
382 317.28 atmosphere 995.0 43200 < th dose dependent rect. 13 3
389 317.29 atmosphere 1010.0 10 > th dose dependent rect. 24 12
403 317.30 radiation 1.0 1440 < th dose independent rect. 8 1
404 317.30 atmosphere 995.0 43200 < th dose independent rect. 5 11
406 317.30 radiation 1.0 1440 < th dose dependent rect. 8 1
418 317.32 temperature 15.0 720 > th dose independent rect. 17 21
428 317.34 temperature 20.0 720 > th dose dependent rect. 5 3
431 317.35 temperature 15.0 10 > th dose independent rect. 12 23
434 317.36 temperature 15.0 1440 > th dose independent rect. 11 4
438 317.36 temperature 10.0 720 > th dose dependent rect. 5 10
449 317.37 atmosphere 1010.0 90 > th dose dependent rect. 9 14
458 317.38 temperature 15.0 720 > th dose independent rect. 20 3
468 317.40 temperature 10.0 720 > th dose dependent rect. 23 18
469 317.41 humidity 70.0 4320 < th dose independent rect. 19 2
482 317.41 temperature 10.0 720 > th dose dependent rect. 21 20
494 317.44 atmosphere 1010.0 90 < th dose independent rect. 12 23
496 317.44 wind 9.0 43200 > th dose dependent rect. 19 5
505 317.46 wind 1.0 1440 < th dose independent rect. 2 2
527 317.50 wind 7.0 43200 > th dose independent rect. 6 1
529 317.50 humidity 70.0 4320 > th dose independent rect. 21 9
591 317.58 temperature 15.0 30 > th dose independent rect. 14 14
599 317.60 wind 9.0 1440 < th dose independent rect. 21 13
600 317.60 atmosphere 1010.0 10 > th dose independent rect. 10 14
610 317.60 humidity 90.0 270 > th dose dependent rect. 13 18
661 317.67 atmosphere 1010.0 90 > th dose independent rect. 10 23
664 317.67 humidity 80.0 43200 < th dose dependent rect. 7 1
665 317.67 radiation 1.0 90 > th dose dependent rect. 11 1
668 317.68 humidity 70.0 4320 > th dose independent rect. 22 2
669 317.68 radiation 40.0 10 < th dose independent rect. 12 2
672 317.68 atmosphere 1010.0 10 > th dose dependent rect. 9 4
778 317.69 atmosphere 1010.0 30 < th dose independent rect. 3 23
897 317.70 humidity 90.0 10 < th dose dependent rect. 15 21
938 317.72 temperature 15.0 30 > th dose dependent rect. 6 20
956 317.74 atmosphere 1010.0 90 > th dose independent rect. 10 14
971 317.75 atmosphere 1010.0 10 > th dose independent sin 18 NA
972 317.75 atmosphere 1010.0 90 > th dose independent sin 19 NA
973 317.75 humidity 70.0 90 < th dose independent rect. 12 1
974 317.75 wind 9.0 43200 > th dose independent rect. 18 6
981 317.75 precipitation 0.1 43200 > th dose dependent rect. 20 2