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Os03g0695500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1517 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.6 (0.0182) R2 : 0.934
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.25 (0.058) R2dC : 0.354 R2C : 0.692
β3 : -1.91 (0.064) R2dE : 0.21 R2E : 0.551
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.424 (0.0384) R2dN8 : 0.0231 R2N8 : 0.03
σ : 0.342
deviance : 53.94
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_____
C
peak time of C : 15.1
E
wheather : temperature
threshold : 18.3
memory length : 263
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 1.17
open length of G : 3.92

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
51.75 0.338 12.6 0.139 2.25 -2.06 -0.204 1.14 -0.398 15.1 18.4 250 1.17 4.09
52.98 0.339 12.6 0.0626 2.22 -2.03 -0.587 -- -0.418 15.1 18.36 253 1.2 4.07
51.73 0.335 12.6 0.137 2.23 -2.04 -- 1.25 -0.394 15.1 18.4 255 1.15 4.08
53.95 0.342 12.6 0.0545 2.24 -1.96 -- -- -0.426 15.1 18.3 261 1.17 3.96
184.86 0.633 12.6 -0.00112 -- -3.02 -- 0.573 -0.416 -- 15.74 210 0.00798 5.8
129.07 0.533 12.6 -0.134 3.45 -- 0.00914 -- -0.507 15.9 -- -- -- --
129.07 0.532 12.6 -0.134 3.46 -- -- -- -0.507 15.9 -- -- -- --
184.27 0.632 12.6 -0.05 -- -2.91 -- -- -0.38 -- 15.22 190 0.0093 6.23
53.94 0.342 12.6 -- 2.25 -1.91 -- -- -0.424 15.1 18.3 263 1.17 3.92
783.19 1.31 12.6 -0.276 -- -- -- -- -0.599 -- -- -- -- --
129.55 0.532 12.6 -- 3.46 -- -- -- -0.492 15.9 -- -- -- --
184.07 0.632 12.6 -- -- -2.85 -- -- -0.358 -- 15.44 168 0.00247 6.46
785.2 1.31 12.6 -- -- -- -- -- -0.569 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 53.43 temperature 10.0 270 > th dose dependent rect. 1 4
3 56.22 temperature 10.0 270 > th dose dependent rect. 24 6
4 56.83 temperature 20.0 270 > th dose independent rect. 1 4
5 57.69 radiation 1.0 270 < th dose independent rect. 1 4
7 57.70 radiation 10.0 270 < th dose dependent rect. 1 4
14 57.90 temperature 10.0 270 > th dose independent rect. 1 4
16 57.90 temperature 30.0 270 < th dose independent rect. 1 4
17 57.90 humidity 50.0 270 > th dose independent rect. 1 4
20 57.90 atmosphere 995.0 270 > th dose independent rect. 1 4
21 57.90 atmosphere 1010.0 270 < th dose independent rect. 1 4
26 57.90 temperature 10.0 270 > th dose independent rect. 5 20
27 57.93 wind 9.0 270 < th dose independent rect. 1 4
28 57.94 wind 9.0 270 < th dose independent rect. 5 20
29 58.09 precipitation 0.1 270 < th dose independent rect. 5 20
30 58.09 precipitation 0.1 270 < th dose dependent rect. 5 20
31 58.20 precipitation 0.1 270 < th dose independent rect. 1 4
32 58.20 precipitation 0.1 270 < th dose dependent rect. 1 4
34 58.85 temperature 10.0 270 > th dose dependent rect. 2 2
37 59.07 humidity 50.0 270 > th dose dependent rect. 1 4
43 61.05 temperature 10.0 270 > th dose dependent rect. 10 20
45 61.37 temperature 20.0 270 > th dose independent rect. 24 6
50 61.83 radiation 10.0 270 < th dose independent rect. 24 6
52 62.16 wind 9.0 270 < th dose dependent rect. 1 4
54 62.31 radiation 20.0 90 < th dose dependent rect. 3 4
55 62.36 radiation 10.0 270 < th dose dependent rect. 24 6
62 62.72 temperature 20.0 270 > th dose independent rect. 11 19
63 62.82 temperature 20.0 30 > th dose independent rect. 13 18
73 63.42 atmosphere 1010.0 270 < th dose independent rect. 24 6
75 63.58 radiation 10.0 90 < th dose independent rect. 3 4
79 63.83 humidity 50.0 90 > th dose dependent rect. 3 4
83 63.93 wind 9.0 270 < th dose independent rect. 6 18
86 63.95 temperature 30.0 270 < th dose independent rect. 24 6
87 63.95 humidity 50.0 270 > th dose independent rect. 24 6
90 63.95 atmosphere 995.0 270 > th dose independent rect. 24 6
94 63.95 temperature 10.0 270 > th dose independent rect. 6 18
95 63.97 wind 9.0 270 < th dose independent rect. 24 6
98 63.99 precipitation 0.1 270 < th dose independent rect. 6 18
99 63.99 precipitation 0.1 270 < th dose dependent rect. 6 18
105 64.07 precipitation 0.1 270 < th dose independent rect. 24 6
106 64.07 precipitation 0.1 270 < th dose dependent rect. 24 6
107 64.11 wind 9.0 270 < th dose independent rect. 2 2
108 64.11 temperature 10.0 270 > th dose independent rect. 2 2
110 64.11 temperature 30.0 270 < th dose independent rect. 2 2
111 64.11 humidity 50.0 270 > th dose independent rect. 2 2
114 64.11 atmosphere 995.0 270 > th dose independent rect. 2 2
115 64.11 atmosphere 1010.0 270 < th dose independent rect. 2 2
122 64.11 temperature 10.0 270 > th dose independent rect. 4 22
133 64.20 atmosphere 995.0 270 > th dose independent rect. 5 20
148 64.25 temperature 10.0 10 > th dose dependent rect. 3 4
156 64.35 humidity 50.0 270 > th dose dependent rect. 2 2
157 64.37 precipitation 0.1 270 < th dose independent rect. 2 2
158 64.37 precipitation 0.1 270 < th dose dependent rect. 2 2
196 64.82 temperature 10.0 10 > th dose dependent rect. 13 18
198 64.84 wind 9.0 90 < th dose independent rect. 7 20
223 65.03 temperature 10.0 90 > th dose independent rect. 7 20
323 66.30 wind 9.0 10 < th dose dependent rect. 3 4
330 66.52 radiation 1.0 270 < th dose dependent rect. 1 13
338 66.72 temperature 20.0 10 > th dose independent rect. 3 4
339 66.73 wind 9.0 10 < th dose independent rect. 7 20
352 66.81 wind 9.0 10 < th dose independent rect. 3 4
353 66.81 temperature 10.0 10 > th dose independent rect. 3 4
355 66.81 temperature 30.0 10 < th dose independent rect. 3 4
356 66.81 humidity 50.0 10 > th dose independent rect. 3 4
359 66.81 atmosphere 995.0 10 > th dose independent rect. 3 4
360 66.81 atmosphere 1015.0 10 < th dose independent rect. 3 4
361 66.81 radiation 20.0 10 < th dose independent rect. 3 4
364 66.81 temperature 10.0 10 > th dose independent rect. 7 20
381 66.91 precipitation 0.1 10 < th dose independent rect. 3 4
382 66.91 precipitation 0.1 10 < th dose dependent rect. 3 4
400 66.95 humidity 50.0 10 > th dose dependent rect. 3 4
411 67.18 radiation 1.0 270 < th dose independent rect. 1 13
417 67.24 wind 1.0 270 > th dose independent rect. 5 20
419 67.25 wind 9.0 270 < th dose dependent rect. 24 6
442 67.58 precipitation 0.1 10 < th dose independent rect. 7 20
443 67.58 precipitation 0.1 10 < th dose dependent rect. 7 20
494 67.75 wind 9.0 270 < th dose independent rect. 15 10
523 68.01 radiation 40.0 10 < th dose dependent rect. 3 4
530 68.09 atmosphere 1010.0 270 < th dose independent rect. 11 18
540 68.26 precipitation 0.1 270 < th dose independent rect. 16 9
541 68.26 precipitation 0.1 270 < th dose dependent rect. 16 9
543 68.30 wind 9.0 1440 < th dose independent rect. 3 5
544 68.30 temperature 10.0 1440 > th dose independent rect. 3 5
547 68.30 temperature 30.0 1440 < th dose independent rect. 3 5
551 68.30 humidity 50.0 1440 > th dose independent rect. 3 5
556 68.30 atmosphere 995.0 1440 > th dose independent rect. 3 5
558 68.30 atmosphere 1010.0 90 < th dose independent rect. 13 17
559 68.30 temperature 10.0 1440 > th dose independent rect. 8 19
569 68.40 wind 1.0 270 > th dose independent rect. 1 4
572 68.44 temperature 10.0 270 > th dose independent rect. 15 10
573 68.44 temperature 10.0 270 > th dose independent rect. 1 14
574 68.44 atmosphere 1015.0 270 < th dose independent rect. 1 14
590 68.57 radiation 30.0 270 < th dose independent rect. 15 10
602 68.75 atmosphere 995.0 90 > th dose independent rect. 7 19
623 69.01 atmosphere 995.0 270 > th dose independent rect. 1 14
639 69.24 wind 9.0 270 < th dose independent rect. 1 14
642 69.38 precipitation 0.1 270 < th dose independent rect. 1 15
643 69.38 atmosphere 995.0 10 > th dose independent rect. 7 20
644 69.38 precipitation 0.1 270 < th dose dependent rect. 1 15
647 69.41 precipitation 0.1 270 < th dose independent rect. 5 6
648 69.41 precipitation 0.1 270 < th dose dependent rect. 5 6
651 69.44 atmosphere 995.0 270 > th dose dependent rect. 1 4
653 69.47 temperature 10.0 270 > th dose independent rect. 5 6
654 69.47 atmosphere 995.0 270 > th dose independent rect. 5 6
655 69.47 atmosphere 1015.0 270 < th dose independent rect. 5 6
663 69.51 wind 9.0 270 < th dose independent rect. 5 6
687 69.88 radiation 10.0 90 < th dose dependent rect. 3 10
688 69.91 humidity 50.0 270 > th dose independent rect. 5 6
724 70.53 wind 1.0 30 > th dose independent rect. 7 20
726 70.53 radiation 40.0 270 < th dose dependent rect. 16 9
730 70.59 radiation 10.0 90 < th dose dependent rect. 3 12
732 70.60 atmosphere 1015.0 270 < th dose dependent rect. 1 4
769 70.84 radiation 40.0 90 < th dose independent rect. 13 17
771 70.86 wind 9.0 270 < th dose independent rect. 11 18
783 70.95 atmosphere 1015.0 10 < th dose independent rect. 13 18
812 71.21 precipitation 0.1 270 < th dose independent rect. 6 4
813 71.21 precipitation 0.1 270 < th dose dependent rect. 6 4
814 71.22 temperature 10.0 270 > th dose independent rect. 6 4
815 71.22 atmosphere 995.0 270 > th dose independent rect. 6 4
816 71.22 atmosphere 1015.0 270 < th dose independent rect. 6 4
819 71.25 wind 9.0 270 < th dose independent rect. 6 4
840 71.31 humidity 50.0 270 > th dose independent rect. 6 4
858 71.36 temperature 30.0 270 < th dose independent rect. 6 4
902 71.57 radiation 10.0 90 < th dose dependent rect. 3 14
934 71.82 atmosphere 995.0 270 > th dose dependent rect. 2 2
953 72.02 wind 1.0 270 > th dose independent rect. 2 2
969 72.18 atmosphere 995.0 270 > th dose independent rect. 16 9
972 72.20 temperature 30.0 270 < th dose independent rect. 5 6
973 72.20 humidity 50.0 270 > th dose independent rect. 5 20
999 72.38 atmosphere 1015.0 1440 < th dose independent rect. 4 4