BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0691400 Os03g0691400|AK071319
         (164 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0691400  Phenylacetic acid degradation-related protein ...   335   9e-93
Os05g0137700  Phenylacetic acid degradation-related protein ...   182   8e-47

>Os03g0691400 Phenylacetic acid degradation-related protein domain containing
           protein
          Length = 164

 Score =  335 bits (859), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 164/164 (100%), Positives = 164/164 (100%)

Query: 1   MDDATSSSSRAPRPKTEELDAALHAMGFEIERVSPAEVTGRLLVTPTCCQPFKVLHGGVS 60
           MDDATSSSSRAPRPKTEELDAALHAMGFEIERVSPAEVTGRLLVTPTCCQPFKVLHGGVS
Sbjct: 1   MDDATSSSSRAPRPKTEELDAALHAMGFEIERVSPAEVTGRLLVTPTCCQPFKVLHGGVS 60

Query: 61  ALIAEGLASMGAHMASGYSRVAGVQLSINHFRSAALGDTVLVRAAPLHVGRSTQVWAVKL 120
           ALIAEGLASMGAHMASGYSRVAGVQLSINHFRSAALGDTVLVRAAPLHVGRSTQVWAVKL
Sbjct: 61  ALIAEGLASMGAHMASGYSRVAGVQLSINHFRSAALGDTVLVRAAPLHVGRSTQVWAVKL 120

Query: 121 WKLDPSTKEKGAQISESRVTLLCNLPVPESVKNAGEALKKYSKL 164
           WKLDPSTKEKGAQISESRVTLLCNLPVPESVKNAGEALKKYSKL
Sbjct: 121 WKLDPSTKEKGAQISESRVTLLCNLPVPESVKNAGEALKKYSKL 164



>Os05g0137700 Phenylacetic acid degradation-related protein domain containing
           protein
          Length = 169

 Score =  182 bits (462), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 90/164 (54%), Positives = 117/164 (71%), Gaps = 1/164 (0%)

Query: 2   DDATSSSSRAPRPKTEELDAALHAMGFEIERVSPAEVTGRLLVTPTCCQPFKVLHGGVSA 61
           +D    SS    P+    D ALH++G E   ++  EV GRLLVT TCCQPFKVL GGVSA
Sbjct: 6   EDGKRESSWPWPPEYGPPDNALHSLGMEFTTITAGEVVGRLLVTATCCQPFKVLGGGVSA 65

Query: 62  LIAEGLASMGAHMASGYSRVAGVQLSINHFRSAALGDTVLVRAAPLHVGRSTQVWAVKLW 121
           L+AE  AS+G ++ASGY RVAGVQLSINH R A LG+TV  +A P+ +GR+ QVW V++W
Sbjct: 66  LMAEAAASIGGYIASGYRRVAGVQLSINHIRPAHLGETVQAKAKPMQLGRTIQVWEVQIW 125

Query: 122 KLDPSTKEKGAQISESRVTLLCNLPVPESVKNAGEA-LKKYSKL 164
           ++DPST E    +S +RVTLLCNLP PE +K+  +  +KK++KL
Sbjct: 126 RIDPSTSECKHLVSTARVTLLCNLPTPEDLKHYEQGFIKKHAKL 169



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.128    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,563,646
Number of extensions: 206422
Number of successful extensions: 601
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 601
Number of HSP's successfully gapped: 2
Length of query: 164
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 71
Effective length of database: 12,179,899
Effective search space: 864772829
Effective search space used: 864772829
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 152 (63.2 bits)