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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0137700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Phenylacetic acid degradation-related protein domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.12 (0.0412) R2 : 0.289
β1 : 1.09 (0.149) R2dD : 0.0935 R2D : 0.031
β2 : 0.756 (0.098) R2dC : 0.0971 R2C : 0.057
β3 : 13.5 (1.29) R2dE : 1.97 R2E : -1.91
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 27.2 (2.74) R2dD*E : 1.77 R2D*E : -1.55
γ1 : 0.164 (0.0845) R2dN8 : 0.00803 R2N8 : -0.0256
σ : 0.742
deviance : 249.82
__
_____
C
peak time of C : 2.64
E
wheather : temperature
threshold : 23.37
memory length : 3
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 8.12
open length of G : 5.89

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
251.22 0.745 3.09 1.04 0.769 10 1.05 20.6 0.169 2.9 23.84 3 8.32 5.68
299.84 0.806 2.96 0.898 1.02 0.891 0.641 -- 0.207 2.75 33.96 3 9.49 8.49
249.82 0.742 3.12 1.09 0.756 13.5 -- 27.2 0.164 2.64 23.37 3 8.12 5.89
297.33 0.803 2.96 1.01 0.907 1.04 -- -- 0.206 2.52 29.28 28 9.24 8.45
274.45 0.776 3.16 1.18 -- 18.5 -- 38.2 0.165 -- 22.91 3 8.27 5.73
304.8 0.818 2.99 0.823 0.648 -- 0.927 -- 0.116 3.62 -- -- -- --
307.2 0.821 3 0.808 0.65 -- -- -- 0.111 3.27 -- -- -- --
322.75 0.84 2.97 0.964 -- 0.614 -- -- 0.237 -- 27.6 5 10.7 17.3
319.51 0.837 3.01 -- 0.761 0.835 -- -- 0.0698 2.86 27.4 19 9.16 8.41
331.14 0.85 3 0.836 -- -- -- -- 0.129 -- -- -- -- --
324.41 0.843 3.02 -- 0.666 -- -- -- 0.0214 3.27 -- -- -- --
320.89 0.834 2.99 -- -- 1.04 -- -- 0.141 -- 30.88 41 12.7 21.6
349.55 0.873 3.02 -- -- -- -- -- 0.0358 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 265.22 temperature 25.0 10 < th dose dependent rect. 8 7
9 269.03 temperature 25.0 10 < th dose dependent rect. 9 1
25 271.30 temperature 25.0 30 < th dose dependent rect. 5 10
37 272.64 temperature 25.0 30 < th dose dependent sin 0 NA
55 275.76 temperature 30.0 30 < th dose dependent rect. 13 22
63 276.58 humidity 90.0 1440 < th dose dependent rect. 5 1
64 276.60 temperature 25.0 30 < th dose dependent rect. 5 18
68 276.69 temperature 25.0 10 < th dose dependent rect. 13 1
77 276.93 radiation 10.0 10 < th dose dependent rect. 14 1
79 276.94 radiation 10.0 10 < th dose independent rect. 14 1
85 277.27 precipitation 0.1 90 > th dose independent rect. 13 1
88 277.27 precipitation 0.1 90 > th dose dependent rect. 13 1
119 278.14 temperature 30.0 30 < th dose dependent rect. 21 18
147 279.70 temperature 30.0 30 < th dose dependent rect. 21 14
156 279.99 temperature 25.0 10 < th dose independent rect. 13 1
178 280.34 temperature 25.0 90 < th dose dependent rect. 24 23
217 281.17 temperature 20.0 720 < th dose independent rect. 3 20
225 281.37 temperature 20.0 720 > th dose independent rect. 4 17
228 281.44 temperature 25.0 90 < th dose dependent rect. 5 5
237 281.50 temperature 25.0 30 < th dose dependent rect. 24 15
240 281.54 wind 5.0 4320 < th dose independent rect. 20 1
281 282.01 temperature 20.0 270 > th dose independent sin 23 NA
294 282.11 temperature 25.0 10 < th dose dependent rect. 5 6
300 282.16 humidity 90.0 1440 < th dose independent rect. 5 1
303 282.16 humidity 50.0 1440 > th dose dependent rect. 5 1
334 282.54 temperature 10.0 30 > th dose dependent rect. 23 23
336 282.58 wind 5.0 4320 > th dose independent rect. 20 1
338 282.60 wind 5.0 4320 < th dose independent rect. 20 3
341 282.67 temperature 20.0 720 < th dose independent rect. 3 3
343 282.71 atmosphere 1005.0 30 > th dose dependent rect. 13 1
347 282.73 wind 5.0 4320 > th dose independent rect. 20 5
371 282.94 temperature 20.0 270 < th dose independent sin 23 NA
376 282.98 wind 5.0 4320 < th dose independent rect. 20 5
383 283.06 wind 5.0 4320 > th dose independent rect. 20 3
419 283.40 wind 7.0 90 > th dose independent rect. 8 1
420 283.40 wind 7.0 90 > th dose dependent rect. 8 1
423 283.41 wind 7.0 90 > th dose dependent rect. 1 8
424 283.42 wind 7.0 90 > th dose independent rect. 4 5
425 283.42 wind 7.0 90 > th dose independent rect. 1 8
439 283.46 temperature 20.0 720 < th dose independent rect. 5 1
442 283.48 temperature 20.0 270 > th dose independent rect. 13 23
445 283.49 atmosphere 995.0 14400 > th dose independent rect. 15 2
451 283.54 temperature 30.0 30 < th dose dependent rect. 21 23
453 283.56 atmosphere 995.0 14400 > th dose independent rect. 12 9
456 283.58 atmosphere 995.0 14400 > th dose independent rect. 14 6
460 283.60 atmosphere 995.0 14400 < th dose dependent rect. 14 5
495 283.63 temperature 20.0 720 > th dose independent rect. 14 21
511 283.67 atmosphere 995.0 14400 < th dose dependent rect. 15 2
514 283.68 temperature 20.0 720 > th dose independent rect. 14 16
523 283.73 humidity 80.0 10 < th dose dependent rect. 22 1
546 283.79 wind 3.0 1440 > th dose dependent rect. 8 1
547 283.80 atmosphere 995.0 14400 < th dose independent rect. 14 3
601 283.87 temperature 20.0 720 > th dose independent rect. 23 21
604 283.88 atmosphere 995.0 14400 > th dose independent rect. 7 14
655 284.08 temperature 20.0 720 > th dose dependent rect. 14 17
676 284.17 temperature 30.0 720 < th dose dependent rect. 18 12
687 284.20 wind 5.0 4320 > th dose dependent rect. 19 7
739 284.40 wind 9.0 43200 > th dose dependent rect. 16 14
751 284.45 temperature 20.0 720 > th dose independent rect. 8 22
752 284.45 temperature 30.0 720 < th dose dependent rect. 12 18
760 284.49 temperature 20.0 4320 > th dose independent rect. 21 2
782 284.55 temperature 10.0 90 > th dose dependent rect. 14 23
791 284.58 temperature 20.0 4320 < th dose independent rect. 20 3
805 284.64 atmosphere 995.0 10 > th dose dependent rect. 21 13
810 284.68 temperature 20.0 720 < th dose independent rect. 13 17
826 284.71 wind 9.0 43200 > th dose independent rect. 18 11
830 284.71 temperature 10.0 720 > th dose dependent rect. 14 21
837 284.73 temperature 25.0 30 < th dose dependent rect. 9 14
839 284.74 wind 9.0 43200 < th dose independent rect. 18 11
841 284.74 atmosphere 1000.0 30 > th dose dependent rect. 13 21
857 284.78 wind 9.0 43200 > th dose independent rect. 17 13
860 284.78 wind 5.0 10 > th dose dependent rect. 21 1
869 284.80 temperature 20.0 270 > th dose dependent rect. 1 9
874 284.81 wind 9.0 43200 > th dose dependent rect. 16 9
890 284.86 wind 5.0 10 > th dose independent rect. 21 1
896 284.88 temperature 30.0 30 < th dose dependent no NA NA
905 284.89 wind 3.0 4320 > th dose dependent rect. 20 1
906 284.89 atmosphere 1005.0 30 > th dose dependent rect. 13 10
910 284.89 temperature 30.0 30 < th dose dependent rect. 9 23
953 285.01 temperature 20.0 270 > th dose dependent rect. 23 11
972 285.05 wind 9.0 43200 < th dose independent rect. 18 5
978 285.06 precipitation 0.1 4320 > th dose dependent rect. 17 1