BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0649000 Os03g0649000|J100048O04
         (204 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0649000  Conserved hypothetical protein                      235   1e-62
Os12g0620600  Conserved hypothetical protein                       97   1e-20

>Os03g0649000 Conserved hypothetical protein
          Length = 204

 Score =  235 bits (600), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 129/189 (68%), Positives = 129/189 (68%)

Query: 16  KFRVRLVVRRAEGLQQPCXXXXXXXXXXXXXXPPTRVAAEVRWKGPKASPLSSLXXXXXX 75
           KFRVRLVVRRAEGLQQPC              PPTRVAAEVRWKGPKASPLSSL      
Sbjct: 16  KFRVRLVVRRAEGLQQPCAAAAEHAASAEAEAPPTRVAAEVRWKGPKASPLSSLRRTAVR 75

Query: 76  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEEEFESTVTLAAASHREHA 135
                                                   WEEEFESTVTLAAASHREHA
Sbjct: 76  RNRTREAEAEAAAVVACATAADDAAAAAGAGDAAGVVVAAWEEEFESTVTLAAASHREHA 135

Query: 136 AFQPWELAFSVFTAANRGPKIKPSILGTASLNLADYASAAEENIEIILPLSVPNGSAESA 195
           AFQPWELAFSVFTAANRGPKIKPSILGTASLNLADYASAAEENIEIILPLSVPNGSAESA
Sbjct: 136 AFQPWELAFSVFTAANRGPKIKPSILGTASLNLADYASAAEENIEIILPLSVPNGSAESA 195

Query: 196 PSLHVSLWC 204
           PSLHVSLWC
Sbjct: 196 PSLHVSLWC 204



>Os12g0620600 Conserved hypothetical protein
          Length = 753

 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/80 (67%), Positives = 66/80 (82%), Gaps = 4/80 (5%)

Query: 125 TLAAASHREH-AAFQPWELAFSVF-TAANRGPKIKPSILGTASLNLADYASAAEENIEII 182
           T  A SHR+  AAF PW+LAFSVF   +N+GPK +  ILGTASLNLA+Y SA+EE +EII
Sbjct: 92  TFTATSHRKSGAAFHPWDLAFSVFVNDSNKGPKGE-LILGTASLNLAEYTSASEE-VEII 149

Query: 183 LPLSVPNGSAESAPSLHVSL 202
           LPLSVPNGS+ES+PSLH++L
Sbjct: 150 LPLSVPNGSSESSPSLHLTL 169



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.128    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,248,702
Number of extensions: 118138
Number of successful extensions: 245
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 3
Length of query: 204
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 108
Effective length of database: 12,023,257
Effective search space: 1298511756
Effective search space used: 1298511756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 153 (63.5 bits)