BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0647800 Os03g0647800|AK070243
         (263 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0647800  Conserved hypothetical protein                      466   e-131
Os03g0787100  Conserved hypothetical protein                      115   2e-26

>Os03g0647800 Conserved hypothetical protein
          Length = 263

 Score =  466 bits (1198), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 233/263 (88%), Positives = 233/263 (88%)

Query: 1   SPTTANLLLPRLATDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDENGVYDPCSDTR 60
           SPTTANLLLPRLATDR                              RDENGVYDPCSDTR
Sbjct: 1   SPTTANLLLPRLATDRAAMAASASAPPHSLLLAAVALAALASVAAARDENGVYDPCSDTR 60

Query: 61  IQRGDGFSFGIAFATLGAFYSGGSVQLSPCDRRLSLASSGQLAVFRPKVDEISLLTINTT 120
           IQRGDGFSFGIAFATLGAFYSGGSVQLSPCDRRLSLASSGQLAVFRPKVDEISLLTINTT
Sbjct: 61  IQRGDGFSFGIAFATLGAFYSGGSVQLSPCDRRLSLASSGQLAVFRPKVDEISLLTINTT 120

Query: 121 TGFNPATAGGYMVAFAGRKYAARSVPTFVSNSSYTVSSFTLVLEFNKGRLQNLHWKKDGC 180
           TGFNPATAGGYMVAFAGRKYAARSVPTFVSNSSYTVSSFTLVLEFNKGRLQNLHWKKDGC
Sbjct: 121 TGFNPATAGGYMVAFAGRKYAARSVPTFVSNSSYTVSSFTLVLEFNKGRLQNLHWKKDGC 180

Query: 181 GACAKSSSLVCIGKQTCAFRTQSCKSQGPVDCSIGIQLAFSGTDKHESVLNSWYEVSNLR 240
           GACAKSSSLVCIGKQTCAFRTQSCKSQGPVDCSIGIQLAFSGTDKHESVLNSWYEVSNLR
Sbjct: 181 GACAKSSSLVCIGKQTCAFRTQSCKSQGPVDCSIGIQLAFSGTDKHESVLNSWYEVSNLR 240

Query: 241 QYSLYGLYSNLKDTLSGQFNKFF 263
           QYSLYGLYSNLKDTLSGQFNKFF
Sbjct: 241 QYSLYGLYSNLKDTLSGQFNKFF 263



>Os03g0787100 Conserved hypothetical protein
          Length = 123

 Score =  115 bits (289), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/81 (70%), Positives = 68/81 (83%), Gaps = 4/81 (4%)

Query: 48  DENGVYDPCSDTRIQRGDGFSFGIAFATLGAFYSGGSVQLSPCDRRLSLASSG-QLAVFR 106
           D NGVY+PC+D  +QRGDGF+FG+AFA  G F+SGG VQLSPCD RLSLAS G +LAVFR
Sbjct: 36  DTNGVYEPCADAAVQRGDGFTFGVAFAARGDFFSGG-VQLSPCDGRLSLASKGAKLAVFR 94

Query: 107 PKVDEISLLTINTTT--GFNP 125
           P+VDEISLLT+NT+   GF+P
Sbjct: 95  PEVDEISLLTVNTSAAGGFDP 115



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.133    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,816,051
Number of extensions: 294061
Number of successful extensions: 592
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 589
Number of HSP's successfully gapped: 2
Length of query: 263
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 164
Effective length of database: 11,866,615
Effective search space: 1946124860
Effective search space used: 1946124860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)