BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0639300 Os03g0639300|AK060505
         (307 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0639300  Conserved hypothetical protein                      445   e-125
Os08g0361600                                                      114   9e-26
Os12g0610200  Similar to Phytochrome-interacting factor 3 (P...    99   4e-21

>Os03g0639300 Conserved hypothetical protein
          Length = 307

 Score =  445 bits (1145), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/307 (73%), Positives = 226/307 (73%)

Query: 1   MNQFVPDWSNMGDASRTLGEDDNLIELLWCNGHVVMQSQNHHRKLPPRPPEKXXXXXVQE 60
           MNQFVPDWSNMGDASRTLGEDDNLIELLWCNGHVVMQSQNHHRKLPPRPPEK     VQE
Sbjct: 1   MNQFVPDWSNMGDASRTLGEDDNLIELLWCNGHVVMQSQNHHRKLPPRPPEKAAAAAVQE 60

Query: 61  DEAGLWFPFALADSLEKDIFSDLFYXXXXXXXXXXXXXXXXXXXXXXXKTCKGDAAMAEE 120
           DEAGLWFPFALADSLEKDIFSDLFY                       KTCKGDAAMAEE
Sbjct: 61  DEAGLWFPFALADSLEKDIFSDLFYEAPVAATAEAAPAGPGAGADGEGKTCKGDAAMAEE 120

Query: 121 ERGGPGAASEAPRELMPPPKSTNASCSRQQTMSLADGGDNAGDLSELVXXXXXXXXXXXX 180
           ERGGPGAASEAPRELMPPPKSTNASCSRQQTMSLADGGDNAGDLSELV            
Sbjct: 121 ERGGPGAASEAPRELMPPPKSTNASCSRQQTMSLADGGDNAGDLSELVRARRSSGGAARR 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXICGSNQVQVQQRTASEPGRRGAPPSAVGSANAIPCGGR 240
                                 ICGSNQVQVQQRTASEPGRRGAPPSAVGSANAIPCGGR
Sbjct: 181 KAEAGGGGGGASSSMLSAIGSSICGSNQVQVQQRTASEPGRRGAPPSAVGSANAIPCGGR 240

Query: 241 DHGHGHEATTVASSSGRSNCCFGXXXXXXXXXXXXXXXXXXXLDTTEDSESPSEVGVLPS 300
           DHGHGHEATTVASSSGRSNCCFG                   LDTTEDSESPSEVGVLPS
Sbjct: 241 DHGHGHEATTVASSSGRSNCCFGTTTTTEPTSTSNRSSKRKRLDTTEDSESPSEVGVLPS 300

Query: 301 NTNRDAH 307
           NTNRDAH
Sbjct: 301 NTNRDAH 307



>Os08g0361600 
          Length = 135

 Score =  114 bits (285), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 67/106 (63%), Positives = 72/106 (67%), Gaps = 4/106 (3%)

Query: 65  LWFPFALADSLEKDIFSDLFYXXXXXXXXXXXXXXXXXXXXXXXKT--CKGDAAMAEEER 122
           LWFPF LA+SLEKDIFSDLFY                       +   CK D AMAEE  
Sbjct: 7   LWFPFVLANSLEKDIFSDLFYEAPVAAAASAAAAGPGADGDGDGEGKPCKDDTAMAEE-C 65

Query: 123 GGPGAASEAPRELMPPPKSTNASCSRQQTMSLADGGDNAGDLSELV 168
           GGP AASEAPR+LMPPPKS +ASCSRQQT SLA+GGDNAGDLSELV
Sbjct: 66  GGPSAASEAPRDLMPPPKSMHASCSRQQT-SLANGGDNAGDLSELV 110



>Os12g0610200 Similar to Phytochrome-interacting factor 3
          (Phytochrome-associated protein 3) (Basic
          helix-loop-helix protein 8) (bHLH8) (AtbHLH008)
          Length = 445

 Score = 99.0 bits (245), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 48/88 (54%), Positives = 60/88 (68%), Gaps = 6/88 (6%)

Query: 1  MNQFVPDW--SNMGDASRTLGEDDNLIELLWCNGHVVMQSQNHHRKLPPRPPEKX--XXX 56
          MNQFVPDW  ++MGD    LGEDD L+ELLWCNGHVVMQSQ   +  PPRP +       
Sbjct: 1  MNQFVPDWNTTSMGDGFAPLGEDDGLVELLWCNGHVVMQSQAPRK--PPRPEKTTAAAAA 58

Query: 57 XVQEDEAGLWFPFALADSLEKDIFSDLF 84
           + EDE+  WF + + D LEKD+F++LF
Sbjct: 59 AMAEDESASWFQYPVDDVLEKDLFTELF 86



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.311    0.129    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,794,140
Number of extensions: 346306
Number of successful extensions: 1454
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1447
Number of HSP's successfully gapped: 3
Length of query: 307
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 206
Effective length of database: 11,762,187
Effective search space: 2423010522
Effective search space used: 2423010522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 156 (64.7 bits)