BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0639200 Os03g0639200|009-200-F07
         (154 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0639200  Conserved hypothetical protein                      317   3e-87
Os01g0193900  DIRP family protein                                  65   3e-11

>Os03g0639200 Conserved hypothetical protein
          Length = 154

 Score =  317 bits (811), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 154/154 (100%), Positives = 154/154 (100%)

Query: 1   AMCSVSEGEDAYAKVGEALDNLNNRSTGSGSSILGIRRIPPDSGQANSSHQDNTTSGHFD 60
           AMCSVSEGEDAYAKVGEALDNLNNRSTGSGSSILGIRRIPPDSGQANSSHQDNTTSGHFD
Sbjct: 1   AMCSVSEGEDAYAKVGEALDNLNNRSTGSGSSILGIRRIPPDSGQANSSHQDNTTSGHFD 60

Query: 61  PATNNISSPRLPNGCDSEPQFPSELISSCVATILMIQNCTEKQYHPAEVAHILDSALSRL 120
           PATNNISSPRLPNGCDSEPQFPSELISSCVATILMIQNCTEKQYHPAEVAHILDSALSRL
Sbjct: 61  PATNNISSPRLPNGCDSEPQFPSELISSCVATILMIQNCTEKQYHPAEVAHILDSALSRL 120

Query: 121 QPCSSQNVTIFREIEMCMGIIKNQMLALIPTPSG 154
           QPCSSQNVTIFREIEMCMGIIKNQMLALIPTPSG
Sbjct: 121 QPCSSQNVTIFREIEMCMGIIKNQMLALIPTPSG 154



>Os01g0193900 DIRP family protein
          Length = 833

 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 51/74 (68%)

Query: 80  QFPSELISSCVATILMIQNCTEKQYHPAEVAHILDSALSRLQPCSSQNVTIFREIEMCMG 139
           + P  LI +C+AT+L I++ +E ++ P  +A +L+ A   L+P  ++N+ I+ EIE  + 
Sbjct: 751 ELPRNLIFNCIATLLAIKHFSEGRHPPPNIAGVLERACLMLRPSCAENLPIYNEIENFIA 810

Query: 140 IIKNQMLALIPTPS 153
           +IKNQ+LAL+P+ S
Sbjct: 811 VIKNQILALVPSAS 824



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.128    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,723,891
Number of extensions: 238986
Number of successful extensions: 520
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 520
Number of HSP's successfully gapped: 2
Length of query: 154
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 62
Effective length of database: 12,232,113
Effective search space: 758391006
Effective search space used: 758391006
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 151 (62.8 bits)