Os03g0639200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0639200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.87 | 0.234 | 11 | 0.831 | 0.332 | -0.803 | 0.214 | 0.584 | 0.321 | 10.2 | 17.89 | 94 | -- | -- |
| 25.17 | 0.234 | 11 | 0.742 | 0.329 | -0.793 | 0.318 | -- | 0.295 | 10.2 | 17.32 | 94 | -- | -- |
| 25.03 | 0.233 | 11 | 0.868 | 0.334 | -0.813 | -- | 0.735 | 0.331 | 10.3 | 18 | 92 | -- | -- |
| 25.54 | 0.235 | 11 | 0.746 | 0.319 | -0.813 | -- | -- | 0.293 | 10.3 | 17.1 | 107 | -- | -- |
| 26.81 | 0.241 | 11 | 0.877 | -- | -0.9 | -- | 0.61 | 0.334 | -- | 16.17 | 468 | -- | -- |
| 33.49 | 0.271 | 11 | 0.553 | 0.358 | -- | 0.422 | -- | 0.166 | 7.31 | -- | -- | -- | -- |
| 33.97 | 0.273 | 11 | 0.562 | 0.359 | -- | -- | -- | 0.165 | 7.25 | -- | -- | -- | -- |
| 27.13 | 0.243 | 11 | 0.772 | -- | -0.879 | -- | -- | 0.306 | -- | 16.1 | 479 | -- | -- |
| 38.66 | 0.29 | 11 | -- | 0.324 | -0.456 | -- | -- | 0.165 | 8.81 | 18.92 | 60 | -- | -- |
| 40.79 | 0.298 | 11 | 0.568 | -- | -- | -- | -- | 0.171 | -- | -- | -- | -- | -- |
| 42.29 | 0.304 | 11 | -- | 0.365 | -- | -- | -- | 0.103 | 7.14 | -- | -- | -- | -- |
| 41.23 | 0.299 | 11 | -- | -- | -0.552 | -- | -- | 0.188 | -- | 20 | 408 | -- | -- |
| 49.31 | 0.328 | 11 | -- | -- | -- | -- | -- | 0.108 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.92 | temperature | 20 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 3 | 24.11 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 7 | 24.25 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 21 | 24.57 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 48 | 25.02 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 54 | 25.06 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 59 | 25.11 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 60 | 25.12 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 100 | 25.45 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 102 | 25.46 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 108 | 25.48 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 11 |
| 115 | 25.52 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 126 | 25.57 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 147 | 25.62 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 156 | 25.64 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 176 | 25.68 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 183 | 25.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 210 | 25.75 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 230 | 25.78 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 10 |
| 243 | 25.80 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 247 | 25.81 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 262 | 25.83 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 289 | 25.85 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 6 |
| 293 | 25.85 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 300 | 25.86 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 13 |
| 316 | 25.86 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 319 | 25.87 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 337 | 25.87 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 338 | 25.87 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 23 |
| 366 | 25.89 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 441 | 25.91 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 13 |
| 446 | 25.92 | radiation | 1 | 14400 | > th | dose independent | sin | 12 | NA |
| 447 | 25.92 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 461 | 25.92 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 488 | 25.93 | radiation | 1 | 14400 | < th | dose independent | sin | 12 | NA |
| 526 | 25.94 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 554 | 25.95 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 3 |
| 583 | 25.95 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 607 | 25.97 | radiation | 1 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 633 | 25.98 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 697 | 26.00 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 759 | 26.03 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 817 | 26.06 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 839 | 26.06 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 19 |
| 846 | 26.07 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 871 | 26.08 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 8 | 8 |
| 883 | 26.08 | temperature | 20 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 913 | 26.09 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 925 | 26.09 | temperature | 20 | 4320 | > th | dose dependent | rect. | 11 | 3 |
| 955 | 26.10 | temperature | 20 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 972 | 26.11 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 981 | 26.11 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 14 | 2 |