BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0639200 Os03g0639200|009-200-F07
(154 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G05380.2 | chr3:1540562-1546139 FORWARD LENGTH=1053 114 3e-26
AT3G21430.2 | chr3:7544800-7552841 REVERSE LENGTH=1133 108 1e-24
AT5G27610.1 | chr5:9764852-9769706 FORWARD LENGTH=972 89 7e-19
>AT3G05380.2 | chr3:1540562-1546139 FORWARD LENGTH=1053
Length = 1052
Score = 114 bits (284), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 92/157 (58%), Gaps = 18/157 (11%)
Query: 1 AMCSVSEGEDAYAKVGEALDNLNNRSTGSGSSILGIRRIPPDSGQANSSHQDNTTSGHFD 60
A SV EGED + EAL+ ++G ++ S + H + + H +
Sbjct: 908 AASSVKEGEDVNTMIQEALE------------LVGKNQLLRSSMVKHHEHVNGSIEHHHN 955
Query: 61 PATNNISSPRLPN------GCDSEPQFPSELISSCVATILMIQNCTEKQYHPAEVAHILD 114
P+ +N S P N G + Q PSELI+SCVAT LMIQ CTE+QY PA+VA ++D
Sbjct: 956 PSPSNGSEPVANNDLNSQDGSEKNAQMPSELITSCVATWLMIQMCTERQYPPADVAQLID 1015
Query: 115 SALSRLQPCSSQNVTIFREIEMCMGIIKNQMLALIPT 151
+A++ LQP QN+ I+REI+ CMG IK Q+++L+PT
Sbjct: 1016 AAVTSLQPRCPQNLPIYREIQTCMGRIKTQIMSLVPT 1052
>AT3G21430.2 | chr3:7544800-7552841 REVERSE LENGTH=1133
Length = 1132
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 74/112 (66%), Gaps = 20/112 (17%)
Query: 40 PPDSGQANSSHQDNTTSGHFDPATNNISSPRLPNGCDSEPQFPSELISSCVATILMIQNC 99
PP S AN SH + P N++ Q PS+L+S C+AT+LMIQ C
Sbjct: 1041 PPSSTPANDSHLNQ-------PDQNDL-------------QVPSDLVSRCIATLLMIQKC 1080
Query: 100 TEKQYHPAEVAHILDSALSRLQPCSSQNVTIFREIEMCMGIIKNQMLALIPT 151
TE+Q+ P+EVA +LDSA++ LQPC SQN+ I+ EI+ CMGII+NQ+LAL+P+
Sbjct: 1081 TERQFPPSEVAQVLDSAVASLQPCCSQNLPIYTEIQKCMGIIRNQILALVPS 1132
>AT5G27610.1 | chr5:9764852-9769706 FORWARD LENGTH=972
Length = 971
Score = 89.4 bits (220), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 88/158 (55%), Gaps = 21/158 (13%)
Query: 1 AMCSVSEGEDAYAKVGEALDNLNNRSTGSGSSILGIRRIPPDSGQANSSHQDNTTSGHFD 60
A S ED+ V +AL ++ S + GI+ HQ+ T+G D
Sbjct: 827 AASSGKNNEDSENMVHQALSSIGEHQPLDNSIVPGIK------------HQE-YTNGSLD 873
Query: 61 PATNNISSPRLPNGCDSEPQ-------FPSELISSCVATILMIQNCTEKQYHPAEVAHIL 113
+ N + P + NG S+ PSELI+SCVA+ LM+Q ++KQY PA+VA ++
Sbjct: 874 HHSLNTAEP-MSNGFISQEGSGKNKTPMPSELITSCVASWLMMQMISKKQYPPADVAQLM 932
Query: 114 DSALSRLQPCSSQNVTIFREIEMCMGIIKNQMLALIPT 151
D+ ++ LQP QN+ I+REI+ CMG+IK Q++AL+ T
Sbjct: 933 DTVVNDLQPRCPQNMPIYREIQTCMGLIKTQIMALVRT 970
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.128 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,605,552
Number of extensions: 150081
Number of successful extensions: 343
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 342
Number of HSP's successfully gapped: 3
Length of query: 154
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 64
Effective length of database: 8,639,129
Effective search space: 552904256
Effective search space used: 552904256
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 107 (45.8 bits)