Os01g0193900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DIRP family protein.
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Os01g0193900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DIRP family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.2 | 0.374 | 8.04 | 1.5 | 0.259 | 0.954 | -1.09 | -1.42 | 0.586 | 0.542 | 64.62 | 1223 | -- | -- |
| 65.83 | 0.378 | 8.04 | 1.35 | 0.266 | 0.911 | -0.869 | -- | 0.56 | 0.364 | 66 | 1210 | -- | -- |
| 66.76 | 0.381 | 8.04 | 1.59 | 0.0392 | 0.849 | -- | -1.63 | 0.551 | 23.9 | 56.03 | 1494 | -- | -- |
| 68.95 | 0.387 | 8.04 | 1.38 | 0.272 | 0.905 | -- | -- | 0.56 | 23.9 | 65.23 | 1210 | -- | -- |
| 66.97 | 0.381 | 8.04 | 1.58 | -- | 0.826 | -- | -1.61 | 0.546 | -- | 55 | 1504 | -- | -- |
| 79.42 | 0.418 | 8.06 | 1.33 | 0.0876 | -- | -0.96 | -- | 0.467 | 0.559 | -- | -- | -- | -- |
| 83.15 | 0.427 | 8.06 | 1.37 | 0.11 | -- | -- | -- | 0.473 | 22.2 | -- | -- | -- | -- |
| 70.97 | 0.392 | 8.05 | 1.39 | -- | 0.788 | -- | -- | 0.535 | -- | 61 | 1428 | -- | -- |
| 113.61 | 0.496 | 8.07 | -- | 0.444 | 1.13 | -- | -- | 0.476 | 23.2 | 82.44 | 1009 | -- | -- |
| 83.88 | 0.428 | 8.06 | 1.37 | -- | -- | -- | -- | 0.473 | -- | -- | -- | -- | -- |
| 132.79 | 0.539 | 8.1 | -- | 0.119 | -- | -- | -- | 0.32 | 23 | -- | -- | -- | -- |
| 116.93 | 0.504 | 8.06 | -- | -- | 1.05 | -- | -- | 0.478 | -- | 82.76 | 1382 | -- | -- |
| 133.67 | 0.54 | 8.09 | -- | -- | -- | -- | -- | 0.321 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.48 | radiation | 10 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 2 | 62.78 | humidity | 60 | 1440 | > th | dose dependent | rect. | 23 | 19 |
| 7 | 62.93 | humidity | 80 | 720 | > th | dose dependent | rect. | 4 | 20 |
| 18 | 63.07 | humidity | 60 | 1440 | > th | dose dependent | rect. | 10 | 8 |
| 33 | 63.22 | humidity | 60 | 1440 | > th | dose dependent | rect. | 9 | 21 |
| 94 | 63.60 | humidity | 90 | 1440 | < th | dose dependent | rect. | 10 | 7 |
| 98 | 63.61 | humidity | 90 | 1440 | < th | dose dependent | rect. | 22 | 20 |
| 122 | 63.69 | humidity | 60 | 1440 | > th | dose dependent | sin | 23 | NA |
| 149 | 63.77 | radiation | 10 | 1440 | < th | dose dependent | sin | 16 | NA |
| 151 | 63.77 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 165 | 63.81 | humidity | 60 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 175 | 63.85 | humidity | 50 | 1440 | > th | dose dependent | no | NA | NA |
| 179 | 63.85 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 16 |
| 186 | 63.87 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 9 |
| 188 | 63.87 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 12 |
| 199 | 63.88 | humidity | 60 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 200 | 63.89 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 8 |
| 207 | 63.90 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 216 | 63.91 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 333 | 64.09 | humidity | 90 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 359 | 64.13 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 416 | 64.20 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 19 |
| 420 | 64.21 | humidity | 90 | 720 | > th | dose independent | rect. | 4 | 20 |
| 430 | 64.21 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 15 |
| 432 | 64.21 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 17 |
| 436 | 64.22 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 11 |
| 438 | 64.22 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 13 |
| 446 | 64.23 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 9 |
| 503 | 64.30 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 540 | 64.37 | humidity | 80 | 1440 | > th | dose independent | rect. | 2 | 17 |
| 547 | 64.38 | humidity | 90 | 1440 | < th | dose dependent | no | NA | NA |
| 556 | 64.39 | humidity | 90 | 1440 | < th | dose dependent | sin | 23 | NA |
| 565 | 64.40 | humidity | 80 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 588 | 64.41 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 601 | 64.42 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 675 | 64.52 | humidity | 90 | 720 | > th | dose dependent | rect. | 7 | 17 |
| 753 | 64.62 | humidity | 80 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 803 | 64.69 | humidity | 70 | 1440 | > th | dose independent | rect. | 10 | 6 |
| 890 | 64.82 | humidity | 80 | 1440 | > th | dose independent | sin | 0 | NA |
| 923 | 64.89 | humidity | 80 | 1440 | < th | dose independent | sin | 0 | NA |
| 933 | 64.91 | radiation | 1 | 720 | < th | dose independent | rect. | 6 | 18 |