BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0193900 Os01g0193900|AK064472
(833 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G05380.2 | chr3:1540562-1546139 FORWARD LENGTH=1053 243 3e-64
AT5G27610.1 | chr5:9764852-9769706 FORWARD LENGTH=972 239 5e-63
AT3G21430.2 | chr3:7544800-7552841 REVERSE LENGTH=1133 220 2e-57
>AT3G05380.2 | chr3:1540562-1546139 FORWARD LENGTH=1053
Length = 1052
Score = 243 bits (621), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 157/452 (34%), Positives = 230/452 (50%), Gaps = 73/452 (16%)
Query: 428 RLQHCLSSESLRRWCTYEWFYSAVDYPWFMDNEFVNYLNFANLSHLSRLTRSEWSTIRSS 487
+L LS RR C +EWFYSA+D+PWF EFV+YLN L H+ RLTR EWS I+SS
Sbjct: 617 KLATSLSFPFARRRCIFEWFYSAIDHPWFSKMEFVDYLNHVGLGHIPRLTRLEWSVIKSS 676
Query: 488 LGKPRRFSDHFLAAEKDKLENYRKKVRQYYALLSEDSWDSLPPDLARPFSIGQQVIVRHP 547
LG+PRRFS+ FL E++KL+ YR+ VR++Y L + + LP DLARP ++G +VI HP
Sbjct: 677 LGRPRRFSERFLHEEREKLKQYRESVRKHYTELRTGAREGLPTDLARPLAVGNRVIAIHP 736
Query: 548 STRELCDGKVVMMEQDRYNVQFDRPDLGVDEVKDTDCMPVNWLDNLPDDL---------- 597
TRE+ DGK++ ++ ++ NV FD DLGV+ V D DCMP+N L+ +P+ L
Sbjct: 737 KTREIHDGKILTVDHNKCNVLFD--DLGVELVMDIDCMPLNPLEYMPEGLRRQIDKCLSM 794
Query: 598 KKRSFLSNNSHNRVEVEQIPKFTSKENWDHISGEAEPSKTMHITSDEQVEIAVDIERLSN 657
KK + LS N++ V V P +++S P Q ++ I L
Sbjct: 795 KKEAQLSGNTNLGVSVLFPPC-----GLENVSFSMNPPLN-------QGDMIAPI--LHG 840
Query: 658 KSTSGNCGPLQPLQSVDDNVRSRGLSEHRNGH-------NDELDSYITSFVQMSLAQAKQ 710
K +S P Q S +E + E++ + V+ S +A+
Sbjct: 841 KVSSNTSSPRQTNHSYITTYNKAKEAEIQRAQALQHALDEKEMEPEMLEIVKGSKTRAQA 900
Query: 711 MVDEAMKEISE-----------------NGKSSLEETGISNEATDCTG-------PEP-- 744
MVD A+K S GK+ L + + G P P
Sbjct: 901 MVDAAIKAASSVKEGEDVNTMIQEALELVGKNQLLRSSMVKHHEHVNGSIEHHHNPSPSN 960
Query: 745 --ESAANSEL------------PRNLIFNCIATLLAIKHFSEGRHPPPNIAGVLERACLM 790
E AN++L P LI +C+AT L I+ +E ++PP ++A +++ A
Sbjct: 961 GSEPVANNDLNSQDGSEKNAQMPSELITSCVATWLMIQMCTERQYPPADVAQLIDAAVTS 1020
Query: 791 LRPSCAENLPIYNEIENFIAVIKNQILALVPS 822
L+P C +NLPIY EI+ + IK QI++LVP+
Sbjct: 1021 LQPRCPQNLPIYREIQTCMGRIKTQIMSLVPT 1052
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 87/151 (57%), Gaps = 4/151 (2%)
Query: 4 LGPQWSKDELMRFYEAYRRHGKNWKKVSASV-GGKSADTVEALYSVHRTFLSLPEREGTA 62
LGPQW++ EL RFY+AYR+HG+ W++V+A++ +S D VEAL++++R +LSLPE +
Sbjct: 41 LGPQWTRLELERFYDAYRKHGQEWRRVAAAIRNSRSVDMVEALFNMNRAYLSLPEGTASV 100
Query: 63 MGFVALVTGHHNVSQDESKSHKGSDQTVRASGKVRKREATGQKEKEAPHAHRSYHERRTS 122
G +A++T H++V + +G D + + +++ A Q+
Sbjct: 101 AGLIAMMTDHYSVMEGSGSEGEGHDASEVPRKQQKRKRAKPQRSDSPEEVDIQQSIGSPD 160
Query: 123 GLSSFKKRYYGELVKNIPRHPSGKRTPRVPV 153
G +F K+ + RH +GKRTPRVPV
Sbjct: 161 GCLTFLKQARANGTQ---RHATGKRTPRVPV 188
>AT5G27610.1 | chr5:9764852-9769706 FORWARD LENGTH=972
Length = 971
Score = 239 bits (609), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 155/461 (33%), Positives = 232/461 (50%), Gaps = 92/461 (19%)
Query: 424 LQARRLQHCLSSESLRRWCTYEWFYSAVDYPWFMDNEFVNYLNFANLSHLSRLTRSEWST 483
L +L +CLS +RRWC YEWFYSA+DYPWF EF +YLN L H RLTR EWS
Sbjct: 536 LLQEKLSNCLSYPLVRRWCIYEWFYSAIDYPWFAKMEFTDYLNHVGLGHAPRLTRVEWSV 595
Query: 484 IRSSLGKPRRFSDHFLAAEKDKLENYRKKVRQYYALLSEDSWDSLPPDLARPFSIGQQVI 543
I+SSLG+PRR S FL E+DKL+ YR+ VR++Y L + L DLARP S+G +VI
Sbjct: 596 IKSSLGRPRRLSQRFLQDERDKLQEYRESVRKHYTELRGCATGVLHTDLARPLSVGNRVI 655
Query: 544 VRHPSTRELCDGKVVMMEQDRYNVQFDRPDLGVDEVKDTDCMPVNWLDNLPDDLKKRSFL 603
HP TRE+ DGK++ ++ ++ NV FD +LGV+ V D DCMP+N L+ +P+ L++
Sbjct: 656 AIHPKTREIRDGKILTVDHNKCNVLFD--ELGVELVMDIDCMPLNPLEYMPEGLRR---- 709
Query: 604 SNNSHNRVEVEQIPKFTSKENWDHISGEAEPSKTMHITSDEQVEIAVDIERLSNKSTSGN 663
QI K + I EA ++ H +SD V + + L N + S N
Sbjct: 710 -----------QIDKCLA------ICKEARLNR--HPSSDASVLFSPSV--LENVNFSMN 748
Query: 664 CGPL------QPL------------QSVDDNVR------SRGLSEHRNGHNDELDSYITS 699
P +P+ QS+ N + R L+ E++ +
Sbjct: 749 PPPAKQDDIREPVLYGKVIATNTTDQSIVINSKVTGTEIQRTLALQHTSDAQEMEPEMIE 808
Query: 700 FVQMSLAQAKQMVDEAMKEISENGKSSLEETGISNEATDCTG------------------ 741
V S + A+ MVD A+K S +GK++ + + ++A G
Sbjct: 809 IVIESKSIAQAMVDAAIKAAS-SGKNNEDSENMVHQALSSIGEHQPLDNSIVPGIKHQEY 867
Query: 742 ------------PEPESAA----------NSELPRNLIFNCIATLLAIKHFSEGRHPPPN 779
EP S + +P LI +C+A+ L ++ S+ ++PP +
Sbjct: 868 TNGSLDHHSLNTAEPMSNGFISQEGSGKNKTPMPSELITSCVASWLMMQMISKKQYPPAD 927
Query: 780 IAGVLERACLMLRPSCAENLPIYNEIENFIAVIKNQILALV 820
+A +++ L+P C +N+PIY EI+ + +IK QI+ALV
Sbjct: 928 VAQLMDTVVNDLQPRCPQNMPIYREIQTCMGLIKTQIMALV 968
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 88/156 (56%), Gaps = 14/156 (8%)
Query: 4 LGPQWSKDELMRFYEAYRRHGKNWKKVSASV-GGKSADTVEALYSVHRTFLSLPEREGTA 62
LGPQW+K EL+RFY+AYR++ +WKKV+A+V +S + VE L+ ++R +LSLPE +
Sbjct: 41 LGPQWTKRELVRFYDAYRKYVGDWKKVAAAVRNNRSVEMVETLFCMNRAYLSLPEGTASV 100
Query: 63 MGFVALVTGHHNV---SQDESKSHKGSDQTVRASGKVRKREATGQKEKEA--PHAHRSYH 117
G +A++T H++V S+ E + H S+ T + + R + +E PH+ S
Sbjct: 101 AGLIAMMTDHYSVMEGSESEGEDHDASEVTRKHLKRKRPQVLPSDFREEVVPPHSVAS-- 158
Query: 118 ERRTSGLSSFKKRYYGELVKNIPRHPSGKRTPRVPV 153
G SF K+ + + +GKRTPR V
Sbjct: 159 ---VEGCLSFLKQTQAYEKR---QRATGKRTPRFLV 188
>AT3G21430.2 | chr3:7544800-7552841 REVERSE LENGTH=1133
Length = 1132
Score = 220 bits (561), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 105/234 (44%), Positives = 142/234 (60%), Gaps = 2/234 (0%)
Query: 374 DLPESTANISTKIPDLPSQ--LKPEINMXXXXXXXXXXPCGSKYVVCNGADNLQARRLQH 431
D S+ NI + PS +K ++N+ + +G + + H
Sbjct: 533 DHTSSSNNIVEEDESAPSNAVIKKQVNLPTKVRSRRKIVTEKPLTIDDGKISETIEKFSH 592
Query: 432 CLSSESLRRWCTYEWFYSAVDYPWFMDNEFVNYLNFANLSHLSRLTRSEWSTIRSSLGKP 491
C+SS RRWC +EWFYSA+DYPWF EFV YL+ L H+ RLTR EW IRSSLGKP
Sbjct: 593 CISSFRARRWCIFEWFYSAIDYPWFARQEFVEYLDHVGLGHVPRLTRVEWGVIRSSLGKP 652
Query: 492 RRFSDHFLAAEKDKLENYRKKVRQYYALLSEDSWDSLPPDLARPFSIGQQVIVRHPSTRE 551
RRFS+ FL EK+KL YR VR++Y L+ + LP DLARP ++ Q+VI HP +RE
Sbjct: 653 RRFSEQFLKEEKEKLYLYRDSVRKHYDELNTGMREGLPMDLARPLNVSQRVICLHPKSRE 712
Query: 552 LCDGKVVMMEQDRYNVQFDRPDLGVDEVKDTDCMPVNWLDNLPDDLKKRSFLSN 605
+ DG V+ ++ RY +QFD P+LGV+ VKDT+CMP+N L+N+P L + SN
Sbjct: 713 IHDGNVLTVDHCRYRIQFDNPELGVEFVKDTECMPLNPLENMPASLARHYAFSN 766
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 96/160 (60%), Gaps = 10/160 (6%)
Query: 1 MSD-LGPQWSKDELMRFYEAYRRHGKNWKKVSASVGGKSADTVEALYSVHRTFLSLPERE 59
+SD LGPQWSK+EL RFYE YR+ GK WKKV+ V +SA+ VEALY++++ +LSLPE
Sbjct: 39 LSDMLGPQWSKEELERFYEGYRKFGKEWKKVAGFVHSRSAEMVEALYTMNKAYLSLPEGT 98
Query: 60 GTAMGFVALVTGHHNVSQDESKSHKGSD---QTVRASGKVRKREATGQKEKEAPHAHRSY 116
+ +G A++T H++V S S + ++ +T R++ K + +++
Sbjct: 99 ASVVGLTAMMTDHYSVLHGGSDSEQENNEGIETPRSAPKRSRVKSSDHPSIGLEGLSDRL 158
Query: 117 HERRTSG-LSSFKKRYYGELVKNIPRHPSGKRTPRVPVIF 155
R +SG + S KKR + +PR GKRTPR+P+ +
Sbjct: 159 QFRSSSGFMPSLKKRR----TETMPR-AVGKRTPRIPISY 193
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 52/72 (72%)
Query: 751 ELPRNLIFNCIATLLAIKHFSEGRHPPPNIAGVLERACLMLRPSCAENLPIYNEIENFIA 810
++P +L+ CIATLL I+ +E + PP +A VL+ A L+P C++NLPIY EI+ +
Sbjct: 1061 QVPSDLVSRCIATLLMIQKCTERQFPPSEVAQVLDSAVASLQPCCSQNLPIYTEIQKCMG 1120
Query: 811 VIKNQILALVPS 822
+I+NQILALVPS
Sbjct: 1121 IIRNQILALVPS 1132
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.129 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 18,764,682
Number of extensions: 827660
Number of successful extensions: 2152
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2148
Number of HSP's successfully gapped: 9
Length of query: 833
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 726
Effective length of database: 8,173,057
Effective search space: 5933639382
Effective search space used: 5933639382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 116 (49.3 bits)