BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0193900 Os01g0193900|AK064472
         (833 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0193900  DIRP family protein                                1717   0.0  

>Os01g0193900 DIRP family protein
          Length = 833

 Score = 1717 bits (4447), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 823/833 (98%), Positives = 823/833 (98%)

Query: 1   MSDLGPQWSKDELMRFYEAYRRHGKNWKKVSASVGGKSADTVEALYSVHRTFLSLPEREG 60
           MSDLGPQWSKDELMRFYEAYRRHGKNWKKVSASVGGKSADTVEALYSVHRTFLSLPEREG
Sbjct: 1   MSDLGPQWSKDELMRFYEAYRRHGKNWKKVSASVGGKSADTVEALYSVHRTFLSLPEREG 60

Query: 61  TAMGFVALVTGHHNVSQDESKSHKGSDQTVRASGKVRKREATGQKEKEAPHAHRSYHERR 120
           TAMGFVALVTGHHNVSQDESKSHKGSDQTVRASGKVRKREATGQKEKEAPHAHRSYHERR
Sbjct: 61  TAMGFVALVTGHHNVSQDESKSHKGSDQTVRASGKVRKREATGQKEKEAPHAHRSYHERR 120

Query: 121 TSGLSSFKKRYYGELVKNIPRHPSGKRTPRVPVIFPADMNVAHAGIPETENAINCTKKAS 180
           TSGLSSFKKRYYGELVKNIPRHPSGKRTPRVPVIFPADMNVAHAGIPETENAINCTKKAS
Sbjct: 121 TSGLSSFKKRYYGELVKNIPRHPSGKRTPRVPVIFPADMNVAHAGIPETENAINCTKKAS 180

Query: 181 GATNNELECSSHGSPGISESAKFVQGQTFLEAKGTGSLKKRRIEQSMEQGQTIKDEHKTA 240
           GATNNELECSSHGSPGISESAKFVQGQTFLEAKGTGSLKKRRIEQSMEQGQTIKDEHKTA
Sbjct: 181 GATNNELECSSHGSPGISESAKFVQGQTFLEAKGTGSLKKRRIEQSMEQGQTIKDEHKTA 240

Query: 241 MVAKEGNDLTEYQRLTNLFSPDEMLVLDVLESLVTVPSKISEPKINIPSGTLGRDDSALS 300
           MVAKEGNDLTEYQRLTNLFSPDEMLVLDVLESLVTVPSKISEPKINIPSGTLGRDDSALS
Sbjct: 241 MVAKEGNDLTEYQRLTNLFSPDEMLVLDVLESLVTVPSKISEPKINIPSGTLGRDDSALS 300

Query: 301 HRREEGPSVKRSKQGKQVGECSASKTRNKRRKKLIAEEVPTEGVTSNHLDLPEERQVDAT 360
           HRREEGPSVKRSKQGKQVGECSASKTRNKRRKKLIAEEVPTEGVTSNHLDLPEERQVDAT
Sbjct: 301 HRREEGPSVKRSKQGKQVGECSASKTRNKRRKKLIAEEVPTEGVTSNHLDLPEERQVDAT 360

Query: 361 ECALNSDLERGTVDLPESTANISTKIPDLPSQLKPEINMXXXXXXXXXXPCGSKYVVCNG 420
           ECALNSDLERGTVDLPESTANISTKIPDLPSQLKPEINM          PCGSKYVVCNG
Sbjct: 361 ECALNSDLERGTVDLPESTANISTKIPDLPSQLKPEINMSRRSKRKSKSPCGSKYVVCNG 420

Query: 421 ADNLQARRLQHCLSSESLRRWCTYEWFYSAVDYPWFMDNEFVNYLNFANLSHLSRLTRSE 480
           ADNLQARRLQHCLSSESLRRWCTYEWFYSAVDYPWFMDNEFVNYLNFANLSHLSRLTRSE
Sbjct: 421 ADNLQARRLQHCLSSESLRRWCTYEWFYSAVDYPWFMDNEFVNYLNFANLSHLSRLTRSE 480

Query: 481 WSTIRSSLGKPRRFSDHFLAAEKDKLENYRKKVRQYYALLSEDSWDSLPPDLARPFSIGQ 540
           WSTIRSSLGKPRRFSDHFLAAEKDKLENYRKKVRQYYALLSEDSWDSLPPDLARPFSIGQ
Sbjct: 481 WSTIRSSLGKPRRFSDHFLAAEKDKLENYRKKVRQYYALLSEDSWDSLPPDLARPFSIGQ 540

Query: 541 QVIVRHPSTRELCDGKVVMMEQDRYNVQFDRPDLGVDEVKDTDCMPVNWLDNLPDDLKKR 600
           QVIVRHPSTRELCDGKVVMMEQDRYNVQFDRPDLGVDEVKDTDCMPVNWLDNLPDDLKKR
Sbjct: 541 QVIVRHPSTRELCDGKVVMMEQDRYNVQFDRPDLGVDEVKDTDCMPVNWLDNLPDDLKKR 600

Query: 601 SFLSNNSHNRVEVEQIPKFTSKENWDHISGEAEPSKTMHITSDEQVEIAVDIERLSNKST 660
           SFLSNNSHNRVEVEQIPKFTSKENWDHISGEAEPSKTMHITSDEQVEIAVDIERLSNKST
Sbjct: 601 SFLSNNSHNRVEVEQIPKFTSKENWDHISGEAEPSKTMHITSDEQVEIAVDIERLSNKST 660

Query: 661 SGNCGPLQPLQSVDDNVRSRGLSEHRNGHNDELDSYITSFVQMSLAQAKQMVDEAMKEIS 720
           SGNCGPLQPLQSVDDNVRSRGLSEHRNGHNDELDSYITSFVQMSLAQAKQMVDEAMKEIS
Sbjct: 661 SGNCGPLQPLQSVDDNVRSRGLSEHRNGHNDELDSYITSFVQMSLAQAKQMVDEAMKEIS 720

Query: 721 ENGKSSLEETGISNEATDCTGPEPESAANSELPRNLIFNCIATLLAIKHFSEGRHPPPNI 780
           ENGKSSLEETGISNEATDCTGPEPESAANSELPRNLIFNCIATLLAIKHFSEGRHPPPNI
Sbjct: 721 ENGKSSLEETGISNEATDCTGPEPESAANSELPRNLIFNCIATLLAIKHFSEGRHPPPNI 780

Query: 781 AGVLERACLMLRPSCAENLPIYNEIENFIAVIKNQILALVPSASSNARLPMYM 833
           AGVLERACLMLRPSCAENLPIYNEIENFIAVIKNQILALVPSASSNARLPMYM
Sbjct: 781 AGVLERACLMLRPSCAENLPIYNEIENFIAVIKNQILALVPSASSNARLPMYM 833



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.129    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 29,072,868
Number of extensions: 1256974
Number of successful extensions: 2746
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2746
Number of HSP's successfully gapped: 1
Length of query: 833
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 724
Effective length of database: 11,344,475
Effective search space: 8213399900
Effective search space used: 8213399900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 160 (66.2 bits)