BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0633900 Os03g0633900|AK059181
(311 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0633900 Single-strand binding protein family protein 523 e-149
Os03g0611700 Conserved hypothetical protein 73 3e-13
Os01g0949200 Nucleic acid-binding, OB-fold domain containin... 65 6e-11
>Os03g0633900 Single-strand binding protein family protein
Length = 311
Score = 523 bits (1346), Expect = e-149, Method: Compositional matrix adjust.
Identities = 261/311 (83%), Positives = 261/311 (83%)
Query: 1 MVLLAAAAVGPHKTLNPTXXXXXXXXXXXXXXXXXXXXXXXXXXCSAGYREXXXXXXXXX 60
MVLLAAAAVGPHKTLNPT CSAGYRE
Sbjct: 1 MVLLAAAAVGPHKTLNPTLSPPSSGGRRPRLRFPLPLPRGGHLRCSAGYREAAAAAASTS 60
Query: 61 XXXXXPRPTEIPWSRELCNSVRLIGTVGTEVELRQLPSGGSVARGRLAIWKSATETTWVT 120
PRPTEIPWSRELCNSVRLIGTVGTEVELRQLPSGGSVARGRLAIWKSATETTWVT
Sbjct: 61 STTTTPRPTEIPWSRELCNSVRLIGTVGTEVELRQLPSGGSVARGRLAIWKSATETTWVT 120
Query: 121 LAFWDDLAVVASEHVKKGDRIFVSGRLVSDTVDEGPEKRXXXXXXXXXXFNFIESFQQVQ 180
LAFWDDLAVVASEHVKKGDRIFVSGRLVSDTVDEGPEKR FNFIESFQQVQ
Sbjct: 121 LAFWDDLAVVASEHVKKGDRIFVSGRLVSDTVDEGPEKRQVYYKVVVQQFNFIESFQQVQ 180
Query: 181 LYEPEAGLDTLGGKHGDYVGSTSGSSEGKSRDHVDSSSRSTEQLWQAFFANPFDWWDNRT 240
LYEPEAGLDTLGGKHGDYVGSTSGSSEGKSRDHVDSSSRSTEQLWQAFFANPFDWWDNRT
Sbjct: 181 LYEPEAGLDTLGGKHGDYVGSTSGSSEGKSRDHVDSSSRSTEQLWQAFFANPFDWWDNRT 240
Query: 241 NKKNPRYPDFKHKHTGEALWVDGRNNPNWVISQLAILDSRMGSLQGNDRKPVAFMYADDF 300
NKKNPRYPDFKHKHTGEALWVDGRNNPNWVISQLAILDSRMGSLQGNDRKPVAFMYADDF
Sbjct: 241 NKKNPRYPDFKHKHTGEALWVDGRNNPNWVISQLAILDSRMGSLQGNDRKPVAFMYADDF 300
Query: 301 MTPDTDTEAHM 311
MTPDTDTEAHM
Sbjct: 301 MTPDTDTEAHM 311
>Os03g0611700 Conserved hypothetical protein
Length = 141
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 223 QLWQAFFANPFDWWDNRTNKKNPRYPDFKHKHTGEALWVDGRNNPNWVISQLAILDSRMG 282
+LWQ FFA+P++WWDNR +K YPDFKHK TGE LW+ ++P WV QL + D ++
Sbjct: 40 RLWQVFFASPYEWWDNRQSKPYSYYPDFKHKDTGEKLWLRA-DDPPWVRRQLELQDQQLA 98
>Os01g0949200 Nucleic acid-binding, OB-fold domain containing protein
Length = 309
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 209 KSRDHVDSSSRSTEQLWQAFFANPFDWWDNRTNKKNPRYPDFKHKHTGEALWVDGRNNPN 268
KS+D S + +LWQ NP WWDNR++K + +YPDFKHK G LW+ G P
Sbjct: 228 KSQDSSSISKQKQGELWQDLVDNPGKWWDNRSDKPSIKYPDFKHKENGTPLWI-GSQTPK 286
Query: 269 WVISQL 274
W I L
Sbjct: 287 WAIDAL 292
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.132 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,981,748
Number of extensions: 386373
Number of successful extensions: 768
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 767
Number of HSP's successfully gapped: 3
Length of query: 311
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 210
Effective length of database: 11,762,187
Effective search space: 2470059270
Effective search space used: 2470059270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)