Os03g0633900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Single-strand binding protein family protein.
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Os03g0633900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Single-strand binding protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 113.24 | 0.5 | 10.7 | 0.547 | 2.89 | -2.41 | -2.32 | -3.66 | -0.0892 | 16.6 | 0.3073 | 324 | 20 | -- |
| 123.19 | 0.517 | 10.7 | 0.614 | 3.06 | -1.81 | -0.677 | -- | -0.0951 | 16.5 | 1.186 | 309 | 20.5 | -- |
| 121.75 | 0.514 | 10.7 | 0.55 | 3.07 | -1.94 | -- | -1.41 | -0.117 | 16.6 | 0.4824 | 309 | 20.2 | -- |
| 124.23 | 0.519 | 10.7 | 0.6 | 3.09 | -1.77 | -- | -- | -0.112 | 16.5 | 1.37 | 301 | 20.5 | -- |
| 162.37 | 0.593 | 10.6 | 0.593 | -- | -4.37 | -- | 0.221 | -0.331 | -- | 0.122 | 446 | 1.81 | -- |
| 164.41 | 0.601 | 10.7 | 0.758 | 4.07 | -- | -0.2 | -- | -0.0983 | 16.8 | -- | -- | -- | -- |
| 164.51 | 0.601 | 10.7 | 0.757 | 4.07 | -- | -- | -- | -0.0993 | 16.8 | -- | -- | -- | -- |
| 140.05 | 0.551 | 10.7 | 0.71 | -- | -4.19 | -- | -- | -0.125 | -- | 1.515 | 462 | 3.2 | -- |
| 133.75 | 0.539 | 10.7 | -- | 3.04 | -1.9 | -- | -- | -0.116 | 16.5 | 0.4171 | 312 | 20.4 | -- |
| 1042.87 | 1.51 | 10.7 | 0.604 | -- | -- | -- | -- | -0.205 | -- | -- | -- | -- | -- |
| 179.61 | 0.627 | 10.7 | -- | 4.06 | -- | -- | -- | -0.184 | 16.8 | -- | -- | -- | -- |
| 152.84 | 0.576 | 10.7 | -- | -- | -4.16 | -- | -- | -0.194 | -- | 1.137 | 471 | 3.23 | -- |
| 1052.48 | 1.51 | 10.7 | -- | -- | -- | -- | -- | -0.272 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 100.54 | wind | 5.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 2 | 100.57 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 3 | 101.12 | wind | 7.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 14 | 102.45 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 2 |
| 15 | 102.45 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 19 | 103.13 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 23 | 103.42 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 4 |
| 24 | 103.42 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 25 | 103.44 | wind | 5.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 35 | 103.73 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 22 |
| 43 | 104.19 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 20 |
| 44 | 104.19 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 20 |
| 46 | 104.36 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 20 |
| 50 | 104.47 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 52 | 104.47 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 53 | 104.47 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 56 | 104.47 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 57 | 104.47 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 59 | 104.47 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 62 | 104.47 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 22 |
| 63 | 104.53 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 68 | 104.65 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 70 | 104.74 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 76 | 104.99 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 22 |
| 77 | 104.99 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 82 | 105.09 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 84 | 105.09 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 85 | 105.09 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 88 | 105.09 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 89 | 105.09 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 90 | 105.09 | radiation | 20.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 93 | 105.09 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 20 |
| 99 | 105.49 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 2 |
| 114 | 105.72 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 147 | 106.70 | wind | 9.0 | 90 | < th | dose independent | rect. | 8 | 19 |
| 156 | 106.91 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 2 | 4 |
| 198 | 107.35 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 19 |
| 347 | 109.49 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 369 | 109.77 | temperature | 15.0 | 270 | > th | dose independent | rect. | 11 | 10 |
| 413 | 110.58 | temperature | 15.0 | 270 | > th | dose independent | rect. | 15 | 15 |
| 425 | 110.81 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 20 |
| 426 | 110.87 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 11 | 10 |
| 427 | 110.87 | radiation | 30.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 433 | 110.96 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 9 |
| 445 | 111.19 | temperature | 15.0 | 270 | > th | dose independent | rect. | 1 | 20 |
| 447 | 111.20 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 4 | 5 |
| 452 | 111.26 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 7 |
| 453 | 111.26 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 7 |
| 456 | 111.30 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 14 |
| 457 | 111.35 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 9 |
| 458 | 111.35 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 9 |
| 468 | 111.51 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 9 | 19 |
| 469 | 111.54 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 20 |
| 473 | 111.64 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 474 | 111.64 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 9 |
| 480 | 111.70 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 4 |
| 481 | 111.70 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 4 |
| 486 | 111.75 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 21 | 4 |
| 487 | 111.76 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 4 |
| 488 | 111.76 | temperature | 30.0 | 270 | < th | dose independent | rect. | 21 | 4 |
| 489 | 111.76 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 4 |
| 492 | 111.76 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 4 |
| 493 | 111.76 | radiation | 1.0 | 270 | < th | dose independent | rect. | 21 | 4 |
| 504 | 111.77 | wind | 9.0 | 270 | < th | dose independent | rect. | 21 | 14 |
| 506 | 111.81 | wind | 9.0 | 270 | < th | dose independent | rect. | 21 | 4 |
| 524 | 111.94 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 526 | 111.96 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 17 |
| 527 | 111.96 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 529 | 111.97 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 14 |
| 530 | 111.97 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 14 |
| 538 | 112.07 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 21 | 4 |
| 541 | 112.16 | temperature | 10.0 | 270 | > th | dose independent | rect. | 20 | 6 |
| 542 | 112.16 | temperature | 30.0 | 270 | < th | dose independent | rect. | 20 | 6 |
| 543 | 112.16 | humidity | 50.0 | 270 | > th | dose independent | rect. | 20 | 6 |
| 546 | 112.16 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 20 | 6 |
| 547 | 112.16 | radiation | 1.0 | 270 | < th | dose independent | rect. | 20 | 6 |
| 552 | 112.16 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 18 |
| 553 | 112.16 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 18 |
| 554 | 112.16 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 20 | 6 |
| 577 | 112.24 | wind | 9.0 | 270 | < th | dose independent | rect. | 20 | 6 |
| 578 | 112.24 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 610 | 112.44 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 611 | 112.44 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 616 | 112.49 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 628 | 112.64 | radiation | 1.0 | 270 | < th | dose independent | rect. | 2 | 17 |
| 639 | 112.80 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 664 | 113.18 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 20 |
| 666 | 113.18 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 667 | 113.22 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 690 | 113.55 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 20 |
| 697 | 113.69 | wind | 9.0 | 270 | < th | dose independent | rect. | 2 | 18 |
| 721 | 113.94 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 15 |
| 723 | 113.94 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 726 | 113.95 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 22 | 6 |
| 734 | 114.06 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 743 | 114.21 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 4 | 5 |
| 747 | 114.29 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 22 | 3 |
| 774 | 114.69 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 2 | 4 |
| 791 | 114.85 | temperature | 10.0 | 30 | > th | dose independent | rect. | 22 | 6 |
| 792 | 114.85 | temperature | 30.0 | 30 | < th | dose independent | rect. | 22 | 6 |
| 793 | 114.85 | humidity | 50.0 | 30 | > th | dose independent | rect. | 22 | 6 |
| 796 | 114.85 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 22 | 6 |
| 797 | 114.85 | radiation | 1.0 | 30 | < th | dose independent | rect. | 22 | 6 |
| 802 | 114.85 | temperature | 10.0 | 30 | > th | dose independent | rect. | 4 | 18 |
| 804 | 114.85 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 4 | 18 |
| 807 | 114.85 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 22 | 6 |
| 815 | 114.86 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 14 |
| 818 | 114.86 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 14 |
| 821 | 114.87 | wind | 9.0 | 30 | < th | dose independent | rect. | 22 | 6 |
| 823 | 114.87 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 3 | 2 |
| 864 | 115.10 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 922 | 115.18 | wind | 9.0 | 270 | < th | dose independent | rect. | 11 | 10 |
| 947 | 115.34 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 18 |
| 986 | 115.49 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 15 |
| 999 | 115.68 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 2 | 4 |