BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0633900 Os03g0633900|AK059181
(311 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G47720.1 | chr1:17561514-17562859 REVERSE LENGTH=262 104 7e-23
AT4G20010.1 | chr4:10842128-10843989 FORWARD LENGTH=372 91 5e-19
AT5G44785.2 | chr5:18070877-18073010 REVERSE LENGTH=443 75 3e-14
AT1G31010.1 | chr1:11054926-11056873 REVERSE LENGTH=361 71 7e-13
>AT1G47720.1 | chr1:17561514-17562859 REVERSE LENGTH=262
Length = 261
Score = 104 bits (259), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 104/226 (46%), Gaps = 38/226 (16%)
Query: 67 RPTEIPWSRELCNSVRLIGTVGTEVELRQLPSGGSVARGRLAIWK-----SATETTWVTL 121
+P L NSV L+G V + Q+ + G G I + + + ++L
Sbjct: 44 KPLSTKLKFNLVNSVSLMGFVDRSI---QVMNTGPDRFGVFTILRVKDPLNPNRSFRISL 100
Query: 122 AFWDDLAVVASEHVKKGDRIFVSGRLVSDTVDEGPEKRXXXXXXXXXXFNFIESFQQVQL 181
WD +A H+K D I VSGRL S ++ + QV++
Sbjct: 101 RMWDAMARTCIAHLKLNDHILVSGRLES------------YSKSSSDVYSGLNLDYQVKV 148
Query: 182 YE-------PEAGLDTLGGKHGDYVGSTSGSSEGKSRDHVDSSSRSTEQLWQAFFANPFD 234
E P LD+ S + + K+ D ++ S + LWQ FF+NP+D
Sbjct: 149 AEVNYVAAPPSHVLDS----------QISKNPKTKTEDDIEESKKDEIYLWQVFFSNPYD 198
Query: 235 WWDNRTNKKNPRYPDFKHKHTGEALWVDGRNNPNWVISQLAILDSR 280
WWDNR NKKNP+ PDFKHK TGEALW+ + P+W+ +L + D +
Sbjct: 199 WWDNRRNKKNPKQPDFKHKDTGEALWL-CSDLPDWITRRLELFDQK 243
>AT4G20010.1 | chr4:10842128-10843989 FORWARD LENGTH=372
Length = 371
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 101/219 (46%), Gaps = 18/219 (8%)
Query: 66 PRPTEIPWSRELCNSVRLIGTVGTEVELRQLPSGGSVARGRLAIWKSATETT--WVTLAF 123
PRP EI + E+ N V LIG V V+ + S G G + +SA++++ W+ + F
Sbjct: 86 PRPNEIAYESEVANWVNLIGFVDQPVQF-EASSDGKFWAGTVISQRSASDSSGFWIPIIF 144
Query: 124 WDDLAVVASEHVKKGDRIFVSGRLVSDTVDEGPEKRXXXXXXXXXXFNFIESFQQVQLYE 183
DLA A+ +V K D+I VSG+L D+ NFI+ +
Sbjct: 145 EGDLAKTAARYVSKDDQIHVSGKLFIDSPPPNMTYAQANVQVLVQNLNFIQP-----MSP 199
Query: 184 PEAGLDTLGGKHGDYVGSTSGSSEGKSRDHVDSSSRSTEQLWQAFFANPFDWWDNRTNKK 243
+ + + G + K +D +S S W NP +WWD+R NK
Sbjct: 200 SPSPFMVMSSSEKEESGIKKQPARAKQDIVIDEASDS----WNHLIENPKEWWDHRENKV 255
Query: 244 N----PRYPDFKHKHTGEALWVDGRNNPNWVISQLAILD 278
N PR+PDFK K + +LW++ PNWV+ +L L+
Sbjct: 256 NGLVKPRHPDFKSKDSSFSLWLN--KAPNWVLPKLEGLE 292
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 7/83 (8%)
Query: 207 EGKSRDHVDSSSRSTEQL-----WQAFFANPFDWWDNRTNKKNPRYPDFKHKHTGEALWV 261
EG D + +R +QL W+ NP WWDNR +K+N + PDFKHK TGEALW+
Sbjct: 289 EGLEFDVLVPKARVVKQLKGEESWKDLVQNPDKWWDNRIDKRNAKAPDFKHKETGEALWL 348
Query: 262 DGRNNPNWVISQLAILDSRMGSL 284
+ +P WV+ +L + + S+
Sbjct: 349 N--ESPTWVLPKLPPVKKKQESI 369
>AT5G44785.2 | chr5:18070877-18073010 REVERSE LENGTH=443
Length = 442
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 100/230 (43%), Gaps = 28/230 (12%)
Query: 68 PTEIPWSRELCNSVRLIGTVGTEVELRQLPSG----GSVARGRLAIWKSATETTWVTLAF 123
P +I + E+ N + LIG V V+ G G+V R S + W+ + F
Sbjct: 71 PKKIEYKPEISNWINLIGFVEQPVQFGPCSDGKFWAGTVISQRSG---SKSSNFWIPIIF 127
Query: 124 WDDLAVVASEHVKKGDRIFVSGRLVSDTVDEGPEKRXXXXXXXXXXFNFIESFQQV--QL 181
DLA +A +HVKK DRI VSG+L D+ NF+++ +
Sbjct: 128 EGDLAKIAVQHVKKEDRIHVSGKLFIDSPPPNVTYSQSNVQVMVQNLNFVQAATSTTKTI 187
Query: 182 YEPEAGLDTLGGKHGDYVGSTSGSSEGKSRDHVDSSSRSTEQLWQAFFANPFDWWDNRTN 241
PE + ++ K + S + K D S+S W+ NP +W D+R N
Sbjct: 188 SPPEKEVTSIKKK-------PARSKKVKVIDEETSNS------WKHLIENPKEWLDHRGN 234
Query: 242 KKN----PRYPDFKHKHTGEALWVDGRNNPNWVISQLAILDSRMGSLQGN 287
K N P +PDFK K G +LW+ P+W + +L L + +GN
Sbjct: 235 KANGLVKPGHPDFKMKVGGLSLWLS--TAPDWALLKLEELKFDVLVPKGN 282
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 9/71 (12%)
Query: 222 EQLWQAFFANPFDWWDNRTNKKNPRYPDFKHKHTGEALWVDGRNNPNWVISQLAILDSRM 281
E++W+ NP WWDNR +K+NP+ PDFKHK TGEALW+ ++P W +S+L
Sbjct: 379 EEIWKNLVENPSKWWDNRLDKRNPKGPDFKHKETGEALWIG--DSPTWALSKLP------ 430
Query: 282 GSLQGNDRKPV 292
L+ N +PV
Sbjct: 431 -PLKKNQERPV 440
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Query: 222 EQLWQAFFANPFDWWDNRTNKKNPRYPDFKHKHTGEALWVDGRNNPNWVISQLAIL 277
E+ W+ NP W DNR++K N +YPDFKHK TGEALW+ N+P WV+S+L L
Sbjct: 293 EESWKDLVQNPDKWLDNRSDKTNVKYPDFKHKETGEALWMT--NSPIWVLSKLPPL 346
>AT1G31010.1 | chr1:11054926-11056873 REVERSE LENGTH=361
Length = 360
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 99/224 (44%), Gaps = 23/224 (10%)
Query: 66 PRPTEIPWSRELCNSVRLIGTVGTEVELRQLPSG----GSVARGR----LAIWKSATETT 117
PRP E+P+ ++ NS+ LIG V V+ G G+V ++
Sbjct: 60 PRPMEVPYQPKIANSIDLIGYVHQPVQFDSTLDGKFWAGTVISHEPSSDSKSESDSSSNF 119
Query: 118 WVTLAFWDDLAVVASEHVKKGDRIFVSGRLVSDTVDEGPEKRXXXXXXXXXXFNFIESFQ 177
W+ + F DLA A+ ++KK DR+ ++G+++ D + G +F SF
Sbjct: 120 WIPVLFEGDLAHTANSYLKKNDRVHITGQILGDVIQSGANSDQAHVQLFK---SFHGSFS 176
Query: 178 QVQLYEPEAGLDTLGGKHGDYVGSTSGSSEGKSRDHVDSSSRSTE---QLWQAFFANPFD 234
+ ++ G K V T +EG + H S R E LW P +
Sbjct: 177 HQVMVRDLHYIE--GSKAMPKVLPTLDQNEGVLK-HSASVQRGREFGTNLWFDLVDKPNE 233
Query: 235 WWDNRTNKK----NPRYPDFKHKHTGEALWVDGRNNPNWVISQL 274
W D R K+ NP++PDFK K +ALW++ N P ++S+L
Sbjct: 234 WCDYREMKQNGSVNPKHPDFKKKDGSQALWLN--NAPTEILSEL 275
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 219 RSTEQLWQAFFANPFDWWDNRTNKKNPRYPDFKHKHTGEALWVDGRNNPNWVISQLAILD 278
++ E+ W+ N WWDNR +K+ P+ PDFKHK TG LW+ ++P+WV+ +L
Sbjct: 290 KAGEESWKDLVDNMNKWWDNRVDKRTPKSPDFKHKETGVGLWLS--DSPSWVLEKLPPPK 347
Query: 279 SRMGSLQG 286
S+ + G
Sbjct: 348 SKTSDIYG 355
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.132 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,150,542
Number of extensions: 238219
Number of successful extensions: 533
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 526
Number of HSP's successfully gapped: 8
Length of query: 311
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 213
Effective length of database: 8,419,801
Effective search space: 1793417613
Effective search space used: 1793417613
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)