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Os01g0949200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Nucleic acid-binding, OB-fold domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.39 (0.0189) R2 : 0.801
β1 : 1.21 (0.0686) R2dD : 0.141 R2D : 0.118
β2 : 1.34 (0.0553) R2dC : 0.343 R2C : 0.54
β3 : -1.25 (0.0831) R2dE : 0.139 R2E : 0.334
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.163 (0.0415) R2dN8 : 0.00984 R2N8 : -0.0241
σ : 0.35
deviance : 56.42
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C
peak time of C : 16.5
E
wheather : atmosphere
threshold : 1003
memory length : 85
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.9
open length of G : 4.15

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
55.35 0.35 9.38 1.24 1.34 -1.25 0.14 1.03 0.178 16.5 1003 88 3.9 4.15
56.37 0.35 9.39 1.22 1.34 -1.26 -0.148 -- 0.166 16.5 1003 85 3.9 4.14
55.39 0.347 9.38 1.24 1.35 -1.25 -- 0.95 0.178 16.5 1003 85 3.9 4.15
56.42 0.35 9.39 1.21 1.34 -1.25 -- -- 0.163 16.5 1003 85 3.9 4.15
89.38 0.44 9.37 1.27 -- -1.51 -- 0.529 0.123 -- 979.7 140 1.18 6.96
80.82 0.421 9.44 1.16 1.79 -- -0.135 -- -0.00349 17 -- -- -- --
80.87 0.421 9.44 1.16 1.79 -- -- -- -0.00416 17 -- -- -- --
85.5 0.431 9.37 1.2 -- -1.54 -- -- 0.135 -- 966.2 178 0.333 7.6
94.74 0.453 9.41 -- 1.31 -1.15 -- -- 0.0475 16.4 1001 85 4.02 4.18
249.22 0.738 9.42 1.1 -- -- -- -- -0.05 -- -- -- -- --
116.39 0.505 9.47 -- 1.77 -- -- -- -0.133 17 -- -- -- --
123.08 0.517 9.41 -- -- -1.52 -- -- 0.00513 -- 970.8 180 0.223 7.75
280.9 0.782 9.44 -- -- -- -- -- -0.172 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 56.37 atmosphere 1000.0 90 > th dose dependent rect. 4 4
2 56.49 wind 9.0 270 < th dose independent rect. 5 23
3 56.85 wind 7.0 270 < th dose independent rect. 7 20
5 57.04 wind 5.0 90 < th dose independent rect. 4 4
6 57.05 temperature 10.0 90 > th dose dependent rect. 4 4
7 57.07 precipitation 0.1 90 < th dose independent rect. 8 20
8 57.07 precipitation 0.1 90 < th dose dependent rect. 8 20
10 57.17 radiation 10.0 270 < th dose independent rect. 3 4
14 57.29 wind 5.0 270 < th dose independent rect. 4 1
16 57.41 atmosphere 1000.0 270 > th dose dependent rect. 4 1
17 57.48 radiation 20.0 270 < th dose dependent rect. 3 4
23 57.73 precipitation 0.1 90 < th dose independent rect. 4 4
24 57.73 precipitation 0.1 90 < th dose dependent rect. 4 4
29 57.77 temperature 10.0 90 > th dose independent rect. 4 4
31 57.77 temperature 30.0 90 < th dose independent rect. 4 4
32 57.77 humidity 50.0 90 > th dose independent rect. 4 4
34 57.77 atmosphere 995.0 90 > th dose independent rect. 4 4
35 57.77 atmosphere 1015.0 90 < th dose independent rect. 4 4
36 57.77 temperature 10.0 90 > th dose independent rect. 8 20
37 57.77 radiation 1.0 270 < th dose dependent rect. 4 1
41 57.83 atmosphere 995.0 90 > th dose independent rect. 8 20
43 57.91 radiation 40.0 90 < th dose independent rect. 4 4
45 58.00 precipitation 0.1 270 < th dose independent rect. 6 21
47 58.00 precipitation 0.1 270 < th dose dependent rect. 6 21
55 58.17 temperature 10.0 270 > th dose independent rect. 4 1
57 58.17 temperature 30.0 270 < th dose independent rect. 4 1
58 58.17 humidity 50.0 270 > th dose independent rect. 4 1
61 58.17 atmosphere 995.0 270 > th dose independent rect. 4 1
62 58.17 atmosphere 1010.0 270 < th dose independent rect. 4 1
64 58.17 radiation 20.0 270 < th dose independent rect. 4 1
67 58.17 temperature 10.0 270 > th dose independent rect. 5 23
68 58.18 radiation 40.0 270 < th dose dependent rect. 4 1
71 58.22 precipitation 0.1 270 < th dose independent rect. 4 1
72 58.22 precipitation 0.1 270 < th dose dependent rect. 4 1
76 58.29 radiation 1.0 270 < th dose independent rect. 4 1
121 58.73 wind 9.0 90 < th dose dependent rect. 4 4
143 58.94 precipitation 0.1 270 < th dose independent rect. 5 23
144 58.94 precipitation 0.1 270 < th dose dependent rect. 5 23
153 59.17 wind 1.0 270 > th dose independent rect. 3 3
154 59.17 radiation 1.0 270 < th dose independent rect. 3 9
166 59.27 wind 9.0 270 < th dose dependent rect. 4 1
178 59.40 humidity 50.0 270 > th dose dependent rect. 4 1
183 59.44 wind 9.0 1440 < th dose independent rect. 5 4
184 59.44 temperature 10.0 1440 > th dose independent rect. 5 4
187 59.44 humidity 50.0 1440 > th dose independent rect. 5 4
189 59.44 atmosphere 995.0 1440 > th dose independent rect. 5 4
190 59.44 atmosphere 1015.0 1440 < th dose independent rect. 5 4
191 59.44 temperature 10.0 1440 > th dose independent rect. 9 20
230 59.61 humidity 50.0 270 > th dose dependent rect. 3 4
249 59.70 temperature 15.0 90 > th dose independent rect. 8 7
256 59.71 radiation 1.0 270 < th dose independent rect. 3 15
258 59.77 radiation 1.0 270 < th dose dependent rect. 3 9
309 60.01 radiation 1.0 270 < th dose dependent rect. 3 15
322 60.18 atmosphere 1005.0 90 > th dose independent rect. 4 4
369 60.35 humidity 90.0 90 < th dose independent rect. 8 7
374 60.36 atmosphere 995.0 90 > th dose dependent rect. 8 20
450 60.87 wind 9.0 90 < th dose dependent rect. 8 20
459 60.92 wind 9.0 90 < th dose independent rect. 8 7
478 60.99 precipitation 0.1 90 < th dose independent rect. 8 7
479 60.99 precipitation 0.1 90 < th dose dependent rect. 8 7
484 61.04 atmosphere 1015.0 90 < th dose independent rect. 15 17
492 61.08 atmosphere 995.0 90 > th dose independent rect. 8 7
499 61.12 atmosphere 1005.0 270 > th dose independent rect. 4 1
500 61.12 humidity 50.0 90 > th dose independent rect. 8 20
510 61.18 atmosphere 1015.0 90 < th dose independent rect. 8 7
511 61.18 temperature 10.0 90 > th dose independent rect. 15 17
520 61.21 radiation 1.0 90 > th dose independent rect. 4 4
547 61.23 radiation 40.0 270 < th dose dependent rect. 15 16
563 61.32 radiation 1.0 90 > th dose independent rect. 8 7
585 61.48 radiation 40.0 90 < th dose independent rect. 15 17
628 61.68 wind 1.0 90 > th dose independent rect. 8 7
676 61.85 wind 9.0 90 < th dose independent rect. 15 17
694 61.89 wind 1.0 90 > th dose independent rect. 8 20
738 62.10 temperature 10.0 10 > th dose dependent rect. 15 17
747 62.13 radiation 1.0 10 > th dose independent rect. 5 3
769 62.13 wind 9.0 270 < th dose dependent rect. 7 6
819 62.39 radiation 40.0 90 < th dose independent rect. 13 19
822 62.40 temperature 10.0 1440 > th dose independent rect. 9 7
825 62.40 temperature 10.0 1440 > th dose independent rect. 16 17
878 62.55 radiation 20.0 270 < th dose independent rect. 15 16
903 62.64 temperature 30.0 270 < th dose dependent rect. 21 5
920 62.69 wind 7.0 270 < th dose independent rect. 18 9
925 62.70 humidity 90.0 10 < th dose independent rect. 4 4
933 62.71 precipitation 0.1 270 < th dose independent rect. 18 9
935 62.71 precipitation 0.1 270 < th dose dependent rect. 18 9
938 62.72 precipitation 0.1 90 < th dose independent rect. 15 17
940 62.72 precipitation 0.1 90 < th dose dependent rect. 15 17
969 62.75 atmosphere 995.0 90 > th dose independent rect. 15 17
980 62.79 wind 9.0 270 < th dose dependent rect. 8 3