BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0633400 Os03g0633400|Os03g0633400
(600 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0633400 Cyclin-like F-box domain containing protein 909 0.0
Os12g0601000 Conserved hypothetical protein 637 0.0
>Os03g0633400 Cyclin-like F-box domain containing protein
Length = 600
Score = 909 bits (2348), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/600 (78%), Positives = 473/600 (78%)
Query: 1 MASLXXXXXXXXXXTRGSYNCGRCGLPKKGHVCXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
MASL TRGSYNCGRCGLPKKGHVC
Sbjct: 1 MASLPKPPPPPRPKTRGSYNCGRCGLPKKGHVCAAGGPAPTPSPSSSSGAATTTTSGGGG 60
Query: 61 XXXXXXKLRRALSFEDXXXXXXXXXXXXXEKKPRVVPDADAXXXXXXXXXXXXXXXXXXX 120
KLRRALSFED EKKPRVVPDADA
Sbjct: 61 GGGEGTKLRRALSFEDAATASASATPSSPEKKPRVVPDADAVGRGGEGEVEMVEGQGGEE 120
Query: 121 XXXXXXXXXXXXXRAVPRELMAEVLRRLGPRGVMAAAAVSRGWRDCAGRVWXXXXXXXXX 180
RAVPRELMAEVLRRLGPRGVMAAAAVSRGWRDCAGRVW
Sbjct: 121 ELKEEEEAVELGGRAVPRELMAEVLRRLGPRGVMAAAAVSRGWRDCAGRVWRAAEELRLR 180
Query: 181 XXGVSLVGALLPRCPALSRLSLRMESDVDATILACLAFSCPSLGTLEISMSDNAVNRMTG 240
GVSLVGALLPRCPALSRLSLRMESDVDATILACLAFSCPSLGTLEISMSDNAVNRMTG
Sbjct: 181 AAGVSLVGALLPRCPALSRLSLRMESDVDATILACLAFSCPSLGTLEISMSDNAVNRMTG 240
Query: 241 EELSRFVSEKHSLSVLKIXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSVINCPNMSEISL 300
EELSRFVSEKHSLSVLKI KSVINCPNMSEISL
Sbjct: 241 EELSRFVSEKHSLSVLKIGGCCNLGFLNLNSSSLSILWLSDLCSLSKSVINCPNMSEISL 300
Query: 301 CFTQQSNDCTDLVTLMDGLGRTCPNLKNMHISSAQLSNEAVFALEGASLRGLCMLSLILG 360
CFTQQSNDCTDLVTLMDGLGRTCPNLKNMHISSAQLSNEAVFALEGASLRGLCMLSLILG
Sbjct: 301 CFTQQSNDCTDLVTLMDGLGRTCPNLKNMHISSAQLSNEAVFALEGASLRGLCMLSLILG 360
Query: 361 SKITDAAVASIVRSCASLELLDLSGSSISDNGVGMICKAFPHTLSRLLLALCPNVTTCGI 420
SKITDAAVASIVRSCASLELLDLSGSSISDNGVGMICKAFPHTLSRLLLALCPNVTTCGI
Sbjct: 361 SKITDAAVASIVRSCASLELLDLSGSSISDNGVGMICKAFPHTLSRLLLALCPNVTTCGI 420
Query: 421 QFATAQLPLLQLMDCGMTLCASLQNEKQGPYFGEINGAIRFCPKLPTSKKQSTNQKLIIK 480
QFATAQLPLLQLMDCGMTLCASLQNEKQGPYFGEINGAIRFCPKLPTSKKQSTNQKLIIK
Sbjct: 421 QFATAQLPLLQLMDCGMTLCASLQNEKQGPYFGEINGAIRFCPKLPTSKKQSTNQKLIIK 480
Query: 481 HGNLKKLSLWGCSAIDALYLNCPELNDLNLNSCTNLNPERLLLQCPKLKNVHASGCHDML 540
HGNLKKLSLWGCSAIDALYLNCPELNDLNLNSCTNLNPERLLLQCPKLKNVHASGCHDML
Sbjct: 481 HGNLKKLSLWGCSAIDALYLNCPELNDLNLNSCTNLNPERLLLQCPKLKNVHASGCHDML 540
Query: 541 IGAIRNQVLNEFAAAEPHLPCKRLADGSKRVQLPQFAQQEPSQDKKGIDLRRNQCTVHLD 600
IGAIRNQVLNEFAAAEPHLPCKRLADGSKRVQLPQFAQQEPSQDKKGIDLRRNQCTVHLD
Sbjct: 541 IGAIRNQVLNEFAAAEPHLPCKRLADGSKRVQLPQFAQQEPSQDKKGIDLRRNQCTVHLD 600
>Os12g0601000 Conserved hypothetical protein
Length = 564
Score = 637 bits (1643), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/468 (69%), Positives = 374/468 (79%), Gaps = 2/468 (0%)
Query: 134 RAVPRELMAEVLRRLGPRGVMAAAAVSRGWRDCAGRVWXXXXXXXXXXXGVSLVGALLPR 193
R VP E++ EV+RRL PRGV A+AAV RGWR CA RVW GV VGALLPR
Sbjct: 96 RRVPGEVVVEVMRRLPPRGVAASAAVCRGWRGCARRVWRAADELRLRAAGVRPVGALLPR 155
Query: 194 CPALSRLSLRMESDVDATILACLAFSCPSLGTLEISMSDNAVNRMTGEELSRFVSEKHSL 253
CPALSRL LRMESD+DAT+LAC+AFSCP+L LEISM +A NRMTG+EL+RFVSEK SL
Sbjct: 156 CPALSRLVLRMESDIDATMLACVAFSCPNLQYLEISMVGSAANRMTGDELTRFVSEKRSL 215
Query: 254 SVLKIXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSVINCPNMSEISLCFTQQSNDCTDLV 313
SVLK+ KSVINCPN++E+SL FTQQ+ND TDL+
Sbjct: 216 SVLKLDGCSNLNFLNISSSSLSTLWLSDLSSLSKSVINCPNLNELSLGFTQQNNDSTDLI 275
Query: 314 TLMDGLGRTCPNLKNMHISSAQLSNEAVFALEGASLRGLCMLSLILGSKITDAAVASIVR 373
+LMD LGRTC NL+N+HISS L NEAVF+LE A+LRGLCMLSLILGSKITDAAVASIVR
Sbjct: 276 SLMDSLGRTCSNLRNLHISSIHLCNEAVFSLESANLRGLCMLSLILGSKITDAAVASIVR 335
Query: 374 SCASLELLDLSGSSISDNGVGMICKAFPHTLSRLLLALCPNVTTCGIQFATAQLPLLQLM 433
S ASL+LLDLSGSSI+DNG+GMICKAFPHTL+RLLLALCPN+T+CG+Q AT+QLPLLQLM
Sbjct: 336 SYASLDLLDLSGSSITDNGLGMICKAFPHTLTRLLLALCPNITSCGVQVATSQLPLLQLM 395
Query: 434 DCGMTLCASLQNEKQGPYFGEINGAIRFCPKLPTSKKQSTN-QKLIIKHGNLKKLSLWGC 492
DCG +LCA+ Q E + YFGEI G I+FC KLP +KQ N QKLIIKH NLKKLSLWGC
Sbjct: 396 DCGKSLCANSQPEAERSYFGEIYGGIKFCSKLPIQRKQQPNYQKLIIKHANLKKLSLWGC 455
Query: 493 SAIDALYLNCPELNDLNLNSCTNLNPERLLLQCPKLKNVHASGCHDMLIGAIRNQVLNEF 552
SA+DALY+NCPEL+DLNLN CTNL+PERLLLQCP LK+VHASGC DMLIGAIRNQVLNEF
Sbjct: 456 SALDALYVNCPELSDLNLNCCTNLHPERLLLQCPSLKDVHASGCRDMLIGAIRNQVLNEF 515
Query: 553 AAAEPHLPCKRLADGSKRVQLPQFA-QQEPSQDKKGIDLRRNQCTVHL 599
A+AEP +PCKRLADGSKRVQ+P F +Q+ ++K G +R+QCTVHL
Sbjct: 516 ASAEPRVPCKRLADGSKRVQVPHFMLEQQFEEEKWGSGSKRSQCTVHL 563
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.134 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,875,689
Number of extensions: 503979
Number of successful extensions: 1863
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1849
Number of HSP's successfully gapped: 2
Length of query: 600
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 493
Effective length of database: 11,448,903
Effective search space: 5644309179
Effective search space used: 5644309179
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 159 (65.9 bits)