BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0627300 Os03g0627300|AK106686
         (182 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0627300  Similar to ATP binding protein-like                 373   e-104
Os01g0719700  Similar to [4Fe-4S] cluster assembly factor         102   2e-22

>Os03g0627300 Similar to ATP binding protein-like
          Length = 182

 Score =  373 bits (958), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/182 (100%), Positives = 182/182 (100%)

Query: 1   NLCSLYYNISWYQVMSALEKITRGVAWGNLDILVVDMPPGTGDAQLSMSQRLRLSGALIV 60
           NLCSLYYNISWYQVMSALEKITRGVAWGNLDILVVDMPPGTGDAQLSMSQRLRLSGALIV
Sbjct: 1   NLCSLYYNISWYQVMSALEKITRGVAWGNLDILVVDMPPGTGDAQLSMSQRLRLSGALIV 60

Query: 61  STPQDIALIDARRGANMFRKVQVPILGLVENMSCFKCPKCGEKSYIFGEGGGQRTAEEMD 120
           STPQDIALIDARRGANMFRKVQVPILGLVENMSCFKCPKCGEKSYIFGEGGGQRTAEEMD
Sbjct: 61  STPQDIALIDARRGANMFRKVQVPILGLVENMSCFKCPKCGEKSYIFGEGGGQRTAEEMD 120

Query: 121 MKLIGEIPLEIDIRTGSDEGTPIVISSPDSASAQAYIQVAEKVIHRLKELAEERQMGPEI 180
           MKLIGEIPLEIDIRTGSDEGTPIVISSPDSASAQAYIQVAEKVIHRLKELAEERQMGPEI
Sbjct: 121 MKLIGEIPLEIDIRTGSDEGTPIVISSPDSASAQAYIQVAEKVIHRLKELAEERQMGPEI 180

Query: 181 LL 182
           LL
Sbjct: 181 LL 182



>Os01g0719700 Similar to [4Fe-4S] cluster assembly factor
          Length = 500

 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 88/151 (58%), Gaps = 6/151 (3%)

Query: 27  WGNLDILVVDMPPGTGDAQLSMSQRLR-LSGALIVSTPQDIALIDARRGANMFRKVQVPI 85
           WG LD LV+DMPPGTGD  L++ Q +  L+ A+IV+TPQ +A ID  +G  MF K++VP 
Sbjct: 243 WGELDYLVIDMPPGTGDIHLTLCQVVAPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPC 302

Query: 86  LGLVENMSCFKCPKCGEKSYIFGEGGG---QRTAEEMDMKLIGEIPLEIDIRTGSDEGTP 142
           + +VENM  F     G++ Y FG+G G   ++  ++  +  + ++P+   +    D G P
Sbjct: 303 VAVVENMCYFDAD--GKRFYPFGQGSGAQARKVVQQFGIPHLFDLPIRPTLSASGDTGIP 360

Query: 143 IVISSPDSASAQAYIQVAEKVIHRLKELAEE 173
            V++ P    A+ +  +   V+ +  ++ ++
Sbjct: 361 EVVADPQGDVAKTFQNLGVCVVQQCAKIRQQ 391



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,318,535
Number of extensions: 256409
Number of successful extensions: 620
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 618
Number of HSP's successfully gapped: 2
Length of query: 182
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 87
Effective length of database: 12,075,471
Effective search space: 1050565977
Effective search space used: 1050565977
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)