Os03g0627300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ATP binding protein-like.
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Os03g0627300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ATP binding protein-like.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.46 | 0.284 | 8.76 | -0.695 | 0.48 | -0.966 | 0.455 | -1.18 | -0.0536 | 3.61 | 30.48 | 106 | -- | -- |
| 37.87 | 0.287 | 8.77 | -0.882 | 0.467 | -1.06 | 0.0774 | -- | -0.0766 | 3.93 | 59.35 | 109 | -- | -- |
| 36.87 | 0.283 | 8.76 | -0.744 | 0.456 | -0.939 | -- | -0.875 | -0.0742 | 3.78 | 30.11 | 120 | -- | -- |
| 37.61 | 0.286 | 8.77 | -0.875 | 0.458 | -0.907 | -- | -- | -0.0903 | 3.93 | 31.15 | 122 | -- | -- |
| 40.61 | 0.297 | 8.76 | -0.684 | -- | -0.836 | -- | -1.1 | -0.0535 | -- | 26.52 | 1263 | -- | -- |
| 48.56 | 0.327 | 8.74 | -0.66 | 0.178 | -- | -0.428 | -- | 0.0687 | 5.99 | -- | -- | -- | -- |
| 48.91 | 0.328 | 8.74 | -0.665 | 0.18 | -- | -- | -- | 0.0698 | 5.12 | -- | -- | -- | -- |
| 41.86 | 0.301 | 8.78 | -0.893 | -- | -0.766 | -- | -- | -0.0999 | -- | 27.77 | 1281 | -- | -- |
| 56.1 | 0.351 | 8.74 | -- | 0.325 | -0.648 | -- | -- | 0.0667 | 3.71 | 42.64 | 64 | -- | -- |
| 50.61 | 0.332 | 8.74 | -0.658 | -- | -- | -- | -- | 0.0744 | -- | -- | -- | -- | -- |
| 60.56 | 0.364 | 8.72 | -- | 0.169 | -- | -- | -- | 0.144 | 5.26 | -- | -- | -- | -- |
| 59.78 | 0.36 | 8.74 | -- | -- | -0.348 | -- | -- | 0.092 | -- | 31.87 | 1235 | -- | -- |
| 62.05 | 0.368 | 8.73 | -- | -- | -- | -- | -- | 0.147 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.14 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 3 | 34.41 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 8 | 34.77 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 54 | 35.86 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 22 |
| 59 | 35.96 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 70 | 36.09 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 93 | 36.30 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 17 |
| 111 | 36.53 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 119 | 36.58 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 145 | 36.82 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 146 | 36.83 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 173 | 37.04 | temperature | 15 | 270 | > th | dose dependent | sin | 8 | NA |
| 190 | 37.13 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 191 | 37.14 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 230 | 37.36 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 264 | 37.53 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 295 | 37.68 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 322 | 37.75 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 337 | 37.81 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 356 | 37.85 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 410 | 38.05 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 431 | 38.09 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 436 | 38.13 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 458 | 38.18 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 481 | 38.25 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 499 | 38.31 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 533 | 38.37 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 9 |
| 563 | 38.40 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 648 | 38.50 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 13 |
| 663 | 38.52 | temperature | 20 | 1440 | > th | dose dependent | sin | 10 | NA |
| 669 | 38.52 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 10 |
| 761 | 38.61 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 20 |
| 928 | 38.76 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |