BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0627300 Os03g0627300|AK106686
         (182 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G19540.1  | chr4:10657517-10659094 FORWARD LENGTH=314          226   5e-60
AT3G24430.1  | chr3:8868731-8872154 REVERSE LENGTH=533            114   2e-26
AT5G50960.1  | chr5:20734267-20735824 FORWARD LENGTH=351           84   5e-17

>AT4G19540.1 | chr4:10657517-10659094 FORWARD LENGTH=314
          Length = 313

 Score =  226 bits (576), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 108/160 (67%), Positives = 131/160 (81%)

Query: 14  VMSALEKITRGVAWGNLDILVVDMPPGTGDAQLSMSQRLRLSGALIVSTPQDIALIDARR 73
           VMSAL K+T+GV WG+LDILVVDMPPGTGDAQ+S+SQ L+LSGA+IVSTPQD+AL DA R
Sbjct: 136 VMSALAKMTKGVDWGDLDILVVDMPPGTGDAQISISQNLKLSGAVIVSTPQDVALADANR 195

Query: 74  GANMFRKVQVPILGLVENMSCFKCPKCGEKSYIFGEGGGQRTAEEMDMKLIGEIPLEIDI 133
           G +MF KV+VPILGLVENMSCF CP C E S+IFG+ G +RTA +  +KLIGEIPLE+ I
Sbjct: 196 GISMFDKVRVPILGLVENMSCFVCPHCNEPSFIFGKEGARRTAAKKGLKLIGEIPLEMSI 255

Query: 134 RTGSDEGTPIVISSPDSASAQAYIQVAEKVIHRLKELAEE 173
           R GSDEG P+V+SSP S  ++AY  +A+ V+  LKEL E 
Sbjct: 256 REGSDEGVPVVVSSPGSIVSKAYQDLAQNVVKGLKELREN 295



>AT3G24430.1 | chr3:8868731-8872154 REVERSE LENGTH=533
          Length = 532

 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 92/160 (57%), Gaps = 2/160 (1%)

Query: 14  VMSALEKITRGVAWGNLDILVVDMPPGTGDAQLSMSQRLRLSGALIVSTPQDIALIDARR 73
           V   + ++     WG LD LV+DMPPGTGD QL++ Q   L+ A+IV+TPQ +A ID  +
Sbjct: 268 VSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVAPLTAAVIVTTPQKLAFIDVAK 327

Query: 74  GANMFRKVQVPILGLVENMSCFKCPKCGEKSYIFGEGGGQRTAEEMDMKLIGEIPLEIDI 133
           G  MF K++VP + +VENM  F     G++ Y FG+G G    ++  +  + ++P+   +
Sbjct: 328 GVRMFSKLKVPCVAVVENMCHFDAD--GKRYYPFGKGSGSEVVKQFGIPHLFDLPIRPTL 385

Query: 134 RTGSDEGTPIVISSPDSASAQAYIQVAEKVIHRLKELAEE 173
               D GTP V+S P S  A+ +  +   V+ +  ++ ++
Sbjct: 386 SASGDSGTPEVVSDPLSDVARTFQDLGVCVVQQCAKIRQQ 425



>AT5G50960.1 | chr5:20734267-20735824 FORWARD LENGTH=351
          Length = 350

 Score = 83.6 bits (205), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 90/187 (48%), Gaps = 40/187 (21%)

Query: 18  LEKITRGVAWGNLDILVVDMPPGTGDAQLSMSQRL---RLSGALIVSTPQDIALIDARRG 74
           +++  + V WG +D LVVD PPGT D  +S+ Q L    + GA+IV+TPQ+++LID R+ 
Sbjct: 157 IKQFLKDVYWGEIDYLVVDAPPGTSDEHISIVQYLLPTGIDGAIIVTTPQEVSLIDVRKE 216

Query: 75  ANMFRKVQVPILGLVENMSCFKCP------------------------KCGEK------- 103
            +  +KV VP+LG+VENMS    P                         C  K       
Sbjct: 217 VSFCKKVGVPVLGVVENMSGLSQPLKDVKFMKLATETGSSINVTEDVIACLRKNAPELLD 276

Query: 104 ----SYIFGE--GGGQRTAEEMDMKLIGEIPLEIDIRTGSDEGTPIVISSPDSASAQAYI 157
               S +F    GG +R   EM +  +G++P++  +   +++G      +    SA A  
Sbjct: 277 IVACSEVFDSSGGGAERMCREMGVPFLGKVPMDPQLCKAAEQGKSCFEDNKCLISAPALK 336

Query: 158 QVAEKVI 164
            + +KV+
Sbjct: 337 SIIQKVV 343



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,905,594
Number of extensions: 155601
Number of successful extensions: 397
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 396
Number of HSP's successfully gapped: 3
Length of query: 182
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 90
Effective length of database: 8,584,297
Effective search space: 772586730
Effective search space used: 772586730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)