BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0625700 Os03g0625700|AY224571
         (328 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0625700  Similar to Roothairless 1                           669   0.0  
Os11g0276000  Similar to Roothairless 1                           409   e-114

>Os03g0625700 Similar to Roothairless 1
          Length = 328

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/328 (100%), Positives = 328/328 (100%)

Query: 1   MAKSSADDAELRRACAQAVAASGARGEEVSFSIRVAKGRGIFEKLGRLAKPRVLALTVKQ 60
           MAKSSADDAELRRACAQAVAASGARGEEVSFSIRVAKGRGIFEKLGRLAKPRVLALTVKQ
Sbjct: 1   MAKSSADDAELRRACAQAVAASGARGEEVSFSIRVAKGRGIFEKLGRLAKPRVLALTVKQ 60

Query: 61  STKGEAAKAFLRVLKYSSGAVLEPAKLYKLKHLTKVEVISNDPSGCTFVLGFDNLRSQSV 120
           STKGEAAKAFLRVLKYSSGAVLEPAKLYKLKHLTKVEVISNDPSGCTFVLGFDNLRSQSV
Sbjct: 61  STKGEAAKAFLRVLKYSSGAVLEPAKLYKLKHLTKVEVISNDPSGCTFVLGFDNLRSQSV 120

Query: 121 APPQWTMRNIDDRNRLLFSILTMCKEILSYLPKVVGIDFVELALWAKENTVTLDNQSSTQ 180
           APPQWTMRNIDDRNRLLFSILTMCKEILSYLPKVVGIDFVELALWAKENTVTLDNQSSTQ
Sbjct: 121 APPQWTMRNIDDRNRLLFSILTMCKEILSYLPKVVGIDFVELALWAKENTVTLDNQSSTQ 180

Query: 181 DGQEKSVTTQTERKVTVTVENDLVSQAKDEEEDMEALLDTYVMGIGEADAFSERLKQELV 240
           DGQEKSVTTQTERKVTVTVENDLVSQAKDEEEDMEALLDTYVMGIGEADAFSERLKQELV
Sbjct: 181 DGQEKSVTTQTERKVTVTVENDLVSQAKDEEEDMEALLDTYVMGIGEADAFSERLKQELV 240

Query: 241 ALEAANVYQLLQSEPLIDEVLQGLDAASATVDDMDEWLRIFNMKLRHMREDIASIESRNN 300
           ALEAANVYQLLQSEPLIDEVLQGLDAASATVDDMDEWLRIFNMKLRHMREDIASIESRNN
Sbjct: 241 ALEAANVYQLLQSEPLIDEVLQGLDAASATVDDMDEWLRIFNMKLRHMREDIASIESRNN 300

Query: 301 GLEMQSVNNKGLVEELEKLLDRLRIPQE 328
           GLEMQSVNNKGLVEELEKLLDRLRIPQE
Sbjct: 301 GLEMQSVNNKGLVEELEKLLDRLRIPQE 328



>Os11g0276000 Similar to Roothairless 1
          Length = 875

 Score =  409 bits (1052), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 204/333 (61%), Positives = 259/333 (77%), Gaps = 11/333 (3%)

Query: 1   MAKSSADDAELRRACAQAVAASGARGEEVSFSIRVAKGRGIFEKLGRLA-----KPRVLA 55
           MA+SSADD EL+R+C   + +     E V  S+RVAKGRG++ K G+LA     KPRVLA
Sbjct: 1   MARSSADDMELKRSCEAGILSKEKDRETVVMSMRVAKGRGVWGKAGKLASRHMAKPRVLA 60

Query: 56  LTVKQSTKGEAAKAFLRVLKYSSGAVLEPAKLYKLKHLTKVEVISNDPSGCTFVLGFDNL 115
           +T K+  KG+  KAF+RVLKYS+G VLEPAK+YK+KHL+KVEV+ NDPSGCTF+LGFDNL
Sbjct: 61  VTTKK--KGQRTKAFVRVLKYSNGGVLEPAKVYKMKHLSKVEVVPNDPSGCTFLLGFDNL 118

Query: 116 RSQSVAPPQWTMRNIDDRNRLLFSILTMCKEILSYLPKVVGIDFVELALWAKENTVTLDN 175
           RSQSV+PPQWTMRN DDRNR L  IL MCKEI   +PKVVG+D VE+A+WAK+NT     
Sbjct: 119 RSQSVSPPQWTMRNKDDRNRFLMCILNMCKEIYGAIPKVVGMDVVEMAMWAKDNTTVKVT 178

Query: 176 QSSTQDGQEKSVTTQTERKVTVTVENDLVSQAKDEEEDMEALLDTYVMGIGEADAFSERL 235
           Q ST+DG  +S+  + + +  V ++ DLV Q +D  ED EALLDTY+M IGEA+AFSER+
Sbjct: 179 QVSTKDGPIESLVGEADSQ--VAIQKDLVLQTED--EDTEALLDTYIMAIGEAEAFSERM 234

Query: 236 KQELVALEAANVYQLLQSEPLIDEVLQGLDAASATVDDMDEWLRIFNMKLRHMREDIASI 295
           K+ELVALE+ANVY L+++E +I+EVL+GL+ AS  V+D DEWL IFN+KLRHMREDI SI
Sbjct: 235 KRELVALESANVYALMETETVIEEVLEGLEIASICVEDFDEWLGIFNVKLRHMREDIQSI 294

Query: 296 ESRNNGLEMQSVNNKGLVEELEKLLDRLRIPQE 328
           E RNN LE+QS +N  L++EL+K+L  L+IP E
Sbjct: 295 EWRNNKLELQSDSNVALIDELDKMLVLLQIPPE 327



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.130    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,591,053
Number of extensions: 360542
Number of successful extensions: 1415
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1411
Number of HSP's successfully gapped: 2
Length of query: 328
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 227
Effective length of database: 11,762,187
Effective search space: 2670016449
Effective search space used: 2670016449
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)