Os03g0625700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Roothairless 1.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0625700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Roothairless 1.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.48 | 0.31 | 5.99 | 0.629 | 0.433 | 0.46 | -0.377 | 0.606 | 0.475 | 6.52 | 79.7 | 1322 | -- | -- |
| 43.74 | 0.308 | 5.99 | 0.687 | 0.376 | 0.518 | -0.308 | -- | 0.489 | 7.24 | 78.74 | 1628 | -- | -- |
| 43.83 | 0.308 | 5.99 | 0.624 | 0.431 | 0.459 | -- | 0.62 | 0.477 | 6.57 | 79.67 | 1327 | -- | -- |
| 43.96 | 0.309 | 5.99 | 0.677 | 0.342 | 0.546 | -- | -- | 0.498 | 7.48 | 78.1 | 1732 | -- | -- |
| 47.36 | 0.321 | 6 | 0.72 | -- | 0.698 | -- | -0.199 | 0.534 | -- | 69.87 | 2035 | -- | -- |
| 47.32 | 0.322 | 6.01 | 0.732 | 0.413 | -- | -0.34 | -- | 0.428 | 6.87 | -- | -- | -- | -- |
| 47.61 | 0.323 | 6.01 | 0.726 | 0.412 | -- | -- | -- | 0.429 | 6.97 | -- | -- | -- | -- |
| 47.41 | 0.321 | 6 | 0.697 | -- | 0.684 | -- | -- | 0.528 | -- | 70 | 2034 | -- | -- |
| 54.85 | 0.345 | 6 | -- | 0.311 | 0.673 | -- | -- | 0.479 | 7.29 | 84.31 | 1849 | -- | -- |
| 56.52 | 0.351 | 6.02 | 0.735 | -- | -- | -- | -- | 0.436 | -- | -- | -- | -- | -- |
| 61.51 | 0.367 | 6.03 | -- | 0.42 | -- | -- | -- | 0.348 | 6.86 | -- | -- | -- | -- |
| 58.8 | 0.357 | 6 | -- | -- | 0.872 | -- | -- | 0.5 | -- | 80.98 | 1990 | -- | -- |
| 70.76 | 0.393 | 6.04 | -- | -- | -- | -- | -- | 0.355 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.05 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 24 | 14 |
| 17 | 43.18 | humidity | 70.0 | 1440 | > th | dose dependent | sin | 5 | NA |
| 20 | 43.19 | humidity | 80.0 | 1440 | > th | dose dependent | sin | 3 | NA |
| 31 | 43.23 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 11 | 5 |
| 33 | 43.24 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 3 |
| 54 | 43.30 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 3 |
| 56 | 43.30 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 3 |
| 57 | 43.31 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 3 |
| 137 | 43.45 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 195 | 43.54 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 5 | 17 |
| 201 | 43.54 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 204 | 43.55 | humidity | 80.0 | 1440 | > th | dose dependent | no | NA | NA |
| 242 | 43.59 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 255 | 43.61 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 8 | 23 |
| 294 | 43.66 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 301 | 43.67 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 1 | 14 |
| 342 | 43.71 | humidity | 90.0 | 1440 | < th | dose independent | sin | 3 | NA |
| 343 | 43.71 | humidity | 90.0 | 720 | > th | dose dependent | sin | 23 | NA |
| 352 | 43.73 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 19 | 19 |
| 385 | 43.76 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 1 | 20 |
| 428 | 43.79 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 433 | 43.80 | humidity | 90.0 | 1440 | > th | dose independent | sin | 2 | NA |
| 446 | 43.80 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 23 | 18 |
| 456 | 43.81 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 1 | 17 |
| 462 | 43.81 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 2 | 15 |
| 470 | 43.82 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 24 | 19 |
| 491 | 43.83 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 19 | 19 |
| 496 | 43.83 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 525 | 43.85 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 2 |
| 548 | 43.86 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 573 | 43.87 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 574 | 43.87 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 581 | 43.87 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 593 | 43.88 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 599 | 43.88 | wind | 1.0 | 30 | < th | dose dependent | rect. | 1 | 2 |
| 612 | 43.89 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 22 | 17 |
| 629 | 43.90 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 634 | 43.90 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 17 | 18 |
| 644 | 43.90 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 19 | 23 |
| 710 | 43.92 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 726 | 43.93 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 4 | 11 |
| 756 | 43.94 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 23 | 18 |
| 772 | 43.94 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 23 | 18 |
| 778 | 43.95 | humidity | 90.0 | 1440 | > th | dose independent | no | NA | NA |
| 780 | 43.95 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 2 | 15 |
| 781 | 43.95 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 2 | 15 |
| 786 | 43.95 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 23 | 18 |
| 793 | 43.95 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 804 | 43.95 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 2 | 15 |
| 825 | 43.96 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 829 | 43.96 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 847 | 43.97 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 5 | 10 |
| 866 | 43.97 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 892 | 43.98 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 1 | 14 |
| 906 | 43.98 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 930 | 43.99 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 4 | 14 |
| 995 | 44.02 | humidity | 90.0 | 1440 | < th | dose independent | no | NA | NA |