BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0625700 Os03g0625700|AY224571
(328 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G47550.2 | chr1:17457171-17463896 FORWARD LENGTH=889 458 e-129
AT1G47560.1 | chr1:17466751-17473190 FORWARD LENGTH=888 447 e-126
>AT1G47550.2 | chr1:17457171-17463896 FORWARD LENGTH=889
Length = 888
Score = 458 bits (1179), Expect = e-129, Method: Compositional matrix adjust.
Identities = 232/332 (69%), Positives = 271/332 (81%), Gaps = 12/332 (3%)
Query: 1 MAKSSADDAELRRACAQAVAASGARGEEVSFSIRVAKGRGIFEKLGRL----AKPRVLAL 56
MAKSSADD ELRRAC A+ + + + SIRVAK RG++ K G+L AKPRVLAL
Sbjct: 1 MAKSSADDEELRRACEAAIEGTK---QSIVMSIRVAKSRGVWGKSGKLGRQMAKPRVLAL 57
Query: 57 TVKQSTKGEAAKAFLRVLKYSSGAVLEPAKLYKLKHLTKVEVISNDPSGCTFVLGFDNLR 116
+VK +KG KAFLRV+KYSSG VLEPAK+YKLKHL+KVEVI+NDPSGCTF LGFDNLR
Sbjct: 58 SVK--SKGPRKKAFLRVMKYSSGGVLEPAKMYKLKHLSKVEVITNDPSGCTFTLGFDNLR 115
Query: 117 SQSVAPPQWTMRNIDDRNRLLFSILTMCKEILSYLPKVVGIDFVELALWAKENTVTLDNQ 176
SQSVAPPQWTMRN DDRNRLL IL +CK++L LPKVVGID VE+ALWAK+NT + Q
Sbjct: 116 SQSVAPPQWTMRNTDDRNRLLVCILNICKDVLGRLPKVVGIDIVEMALWAKDNTPVVTTQ 175
Query: 177 SSTQDGQEKSVTTQTERKVTVTVENDLVSQAKDEEEDMEALLDTYVMGIGEADAFSERLK 236
ST+DG E + TE + VTVE +LVSQA EEEDMEALL TYVMGIGEA+AFSERLK
Sbjct: 176 RSTEDG-EPVAESVTESDLKVTVEKELVSQA--EEEDMEALLGTYVMGIGEAEAFSERLK 232
Query: 237 QELVALEAANVYQLLQSEPLIDEVLQGLDAASATVDDMDEWLRIFNMKLRHMREDIASIE 296
+EL ALEAANV+ +L+SEPL+DEVL GL+AA+ VDDMDEWL IFN+KLRHMREDI SIE
Sbjct: 233 RELQALEAANVHAILESEPLVDEVLNGLEAATNIVDDMDEWLGIFNIKLRHMREDIESIE 292
Query: 297 SRNNGLEMQSVNNKGLVEELEKLLDRLRIPQE 328
+RNN LEMQSVNNK L+EEL+K+++RLR+P E
Sbjct: 293 TRNNKLEMQSVNNKALIEELDKVIERLRVPSE 324
>AT1G47560.1 | chr1:17466751-17473190 FORWARD LENGTH=888
Length = 887
Score = 447 bits (1151), Expect = e-126, Method: Compositional matrix adjust.
Identities = 228/332 (68%), Positives = 268/332 (80%), Gaps = 12/332 (3%)
Query: 1 MAKSSADDAELRRACAQAVAASGARGEEVSFSIRVAKGRGIFEKLGRL----AKPRVLAL 56
MAKSSADD ELRRAC A+ + + + SIRVAK RG++ K G+L AKPRVLAL
Sbjct: 1 MAKSSADDEELRRACEAAIEGTK---QSIVMSIRVAKSRGVWGKSGKLGRQMAKPRVLAL 57
Query: 57 TVKQSTKGEAAKAFLRVLKYSSGAVLEPAKLYKLKHLTKVEVISNDPSGCTFVLGFDNLR 116
+VK +KG KA LRV+KYSSG VLEPAK+Y LKHL+KVEVI++DPSGCTF LGFDNLR
Sbjct: 58 SVK--SKGPRKKAILRVMKYSSGGVLEPAKMYDLKHLSKVEVITSDPSGCTFTLGFDNLR 115
Query: 117 SQSVAPPQWTMRNIDDRNRLLFSILTMCKEILSYLPKVVGIDFVELALWAKENTVTLDNQ 176
SQSVAPPQWTMRN DDRNRLL IL +CK++L LPKVVGID VE+ALWAK+NT + Q
Sbjct: 116 SQSVAPPQWTMRNTDDRNRLLVCILNICKDVLGRLPKVVGIDIVEMALWAKDNTPVVTTQ 175
Query: 177 SSTQDGQEKSVTTQTERKVTVTVENDLVSQAKDEEEDMEALLDTYVMGIGEADAFSERLK 236
ST+DG E + TE + VTVE +LVSQA EEEDMEALL TYV+GIGEA+AFSERLK
Sbjct: 176 RSTEDG-EPVAESVTESALKVTVEKELVSQA--EEEDMEALLGTYVIGIGEAEAFSERLK 232
Query: 237 QELVALEAANVYQLLQSEPLIDEVLQGLDAASATVDDMDEWLRIFNMKLRHMREDIASIE 296
+EL ALEAANV+ +L+SEPL+DEVL GL+AA+ VDDMDEWL IFN+KLRHMREDI SIE
Sbjct: 233 RELQALEAANVHAILESEPLVDEVLNGLEAATNIVDDMDEWLGIFNIKLRHMREDIESIE 292
Query: 297 SRNNGLEMQSVNNKGLVEELEKLLDRLRIPQE 328
RNN LEMQSVNNK L+EEL+K+++RLR+P E
Sbjct: 293 IRNNKLEMQSVNNKALIEELDKVIERLRVPSE 324
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.130 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,335,824
Number of extensions: 248690
Number of successful extensions: 1074
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1064
Number of HSP's successfully gapped: 2
Length of query: 328
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 229
Effective length of database: 8,392,385
Effective search space: 1921856165
Effective search space used: 1921856165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)