Os11g0276000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Roothairless 1.
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Os11g0276000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Roothairless 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 173.93 | 0.62 | 3.01 | -0.458 | 0.123 | 23.8 | -0.115 | -139 | 0.123 | 13.7 | 25.1 | 31 | 5.12 | 0.955 |
| 186.17 | 0.64 | 2.92 | 0.158 | 0.119 | 2.32 | -0.0889 | -- | 0.119 | 13.3 | 25.1 | 31 | 5.12 | 0.955 |
| 173.94 | 0.614 | 3.01 | -0.448 | 0.121 | 24.1 | -- | -141 | 0.122 | 13.3 | 25.15 | 30 | 5.43 | 1.08 |
| 186.2 | 0.64 | 2.92 | 0.155 | 0.119 | 2.32 | -- | -- | 0.118 | 13 | 25.1 | 31 | 5.12 | 0.955 |
| 174.71 | 0.616 | 3.03 | -0.555 | -- | 31.4 | -- | -184 | 0.12 | -- | 25.31 | 29 | 5.72 | 0.63 |
| 201.12 | 0.665 | 2.93 | 0.176 | 0.121 | -- | 0.155 | -- | 0.0967 | 9.74 | -- | -- | -- | -- |
| 201.17 | 0.664 | 2.93 | 0.183 | 0.121 | -- | -- | -- | 0.0977 | 10.6 | -- | -- | -- | -- |
| 187.08 | 0.64 | 2.93 | 0.151 | -- | 2.3 | -- | -- | 0.116 | -- | 25.1 | 31 | 5.12 | 0.955 |
| 186.83 | 0.64 | 2.93 | -- | 0.116 | 2.34 | -- | -- | 0.101 | 12.9 | 25.1 | 31 | 5.12 | 0.955 |
| 202.07 | 0.664 | 2.93 | 0.181 | -- | -- | -- | -- | 0.0971 | -- | -- | -- | -- | -- |
| 202.05 | 0.665 | 2.93 | -- | 0.12 | -- | -- | -- | 0.0774 | 10.5 | -- | -- | -- | -- |
| 187.67 | 0.64 | 2.93 | -- | -- | 2.32 | -- | -- | 0.099 | -- | 25.1 | 31 | 5.12 | 0.955 |
| 202.93 | 0.665 | 2.93 | -- | -- | -- | -- | -- | 0.0771 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 179.18 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 5 | 1 |
| 3 | 183.67 | temperature | 30.0 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 4 | 185.28 | temperature | 25.0 | 10 | > th | dose independent | rect. | 5 | 1 |
| 6 | 185.85 | temperature | 30.0 | 90 | > th | dose independent | rect. | 10 | 1 |
| 21 | 187.98 | temperature | 30.0 | 270 | > th | dose independent | rect. | 8 | 3 |
| 92 | 189.38 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 5 | 1 |
| 164 | 191.75 | wind | 7.0 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 183 | 192.55 | temperature | 30.0 | 90 | > th | dose dependent | sin | 8 | NA |
| 184 | 192.73 | temperature | 30.0 | 270 | > th | dose independent | sin | 8 | NA |
| 186 | 192.95 | temperature | 30.0 | 270 | < th | dose independent | sin | 8 | NA |
| 218 | 193.07 | wind | 1.0 | 720 | < th | dose dependent | rect. | 4 | 1 |
| 258 | 193.73 | wind | 7.0 | 10 | > th | dose independent | rect. | 12 | 1 |
| 261 | 193.75 | temperature | 30.0 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 281 | 193.92 | wind | 1.0 | 720 | < th | dose independent | rect. | 4 | 1 |
| 345 | 194.27 | radiation | 40.0 | 270 | > th | dose independent | rect. | 15 | 18 |
| 346 | 194.34 | radiation | 40.0 | 270 | > th | dose independent | rect. | 8 | 1 |
| 364 | 194.39 | humidity | 90.0 | 30 | > th | dose independent | rect. | 5 | 1 |
| 381 | 194.47 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 5 | 1 |
| 382 | 194.49 | wind | 5.0 | 720 | > th | dose independent | rect. | 4 | 1 |
| 383 | 194.50 | wind | 5.0 | 720 | > th | dose dependent | rect. | 4 | 1 |
| 388 | 194.60 | temperature | 30.0 | 10 | > th | dose independent | rect. | 10 | 2 |
| 413 | 194.84 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 5 | 3 |
| 456 | 194.98 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 5 | 1 |
| 485 | 195.17 | temperature | 30.0 | 270 | < th | dose independent | rect. | 22 | 13 |
| 490 | 195.20 | temperature | 30.0 | 90 | < th | dose independent | rect. | 24 | 14 |
| 526 | 195.32 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 5 | 1 |
| 528 | 195.36 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 5 | 12 |
| 545 | 195.61 | humidity | 90.0 | 30 | > th | dose independent | rect. | 5 | 7 |
| 555 | 195.65 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 5 | 19 |
| 560 | 195.70 | radiation | 1.0 | 90 | > th | dose independent | rect. | 5 | 1 |
| 578 | 195.76 | wind | 3.0 | 30 | < th | dose dependent | rect. | 5 | 1 |
| 580 | 195.78 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 5 | 16 |
| 582 | 195.79 | wind | 7.0 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 626 | 195.92 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 5 | 23 |
| 627 | 195.92 | wind | 3.0 | 30 | < th | dose dependent | rect. | 5 | 4 |
| 629 | 195.93 | wind | 1.0 | 270 | < th | dose dependent | rect. | 4 | 4 |
| 635 | 195.97 | radiation | 30.0 | 270 | > th | dose dependent | rect. | 8 | 1 |
| 638 | 195.99 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 5 | 1 |
| 685 | 196.18 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 5 | 16 |
| 691 | 196.22 | temperature | 30.0 | 30 | < th | dose independent | rect. | 6 | 8 |
| 692 | 196.23 | temperature | 20.0 | 720 | > th | dose independent | rect. | 4 | 2 |
| 712 | 196.27 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 5 | 13 |
| 721 | 196.32 | wind | 3.0 | 30 | < th | dose independent | rect. | 5 | 1 |
| 724 | 196.32 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 6 | 23 |
| 726 | 196.33 | wind | 9.0 | 720 | > th | dose dependent | rect. | 1 | 9 |
| 749 | 196.40 | wind | 5.0 | 720 | < th | dose independent | rect. | 24 | 7 |
| 753 | 196.40 | wind | 5.0 | 720 | < th | dose dependent | rect. | 4 | 1 |
| 799 | 196.48 | wind | 7.0 | 30 | < th | dose independent | rect. | 6 | 23 |
| 806 | 196.53 | wind | 1.0 | 90 | > th | dose independent | rect. | 24 | 14 |
| 807 | 196.53 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 2 | 22 |
| 812 | 196.56 | radiation | 10.0 | 30 | < th | dose independent | rect. | 5 | 1 |
| 814 | 196.56 | humidity | 50.0 | 30 | > th | dose independent | rect. | 6 | 23 |
| 839 | 196.61 | wind | 9.0 | 720 | > th | dose dependent | rect. | 9 | 1 |
| 851 | 196.63 | radiation | 1.0 | 720 | > th | dose independent | rect. | 4 | 2 |
| 891 | 196.69 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 7 | 9 |
| 894 | 196.70 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 1 | 20 |
| 899 | 196.71 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 5 | 12 |
| 900 | 196.72 | wind | 7.0 | 30 | < th | dose independent | rect. | 5 | 1 |
| 902 | 196.72 | temperature | 10.0 | 30 | > th | dose independent | rect. | 5 | 1 |
| 904 | 196.72 | temperature | 30.0 | 30 | < th | dose independent | rect. | 5 | 1 |
| 905 | 196.72 | humidity | 50.0 | 30 | > th | dose independent | rect. | 5 | 1 |
| 909 | 196.72 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 5 | 1 |
| 916 | 196.72 | temperature | 10.0 | 30 | > th | dose independent | rect. | 6 | 23 |
| 921 | 196.73 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 5 | 1 |
| 927 | 196.73 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 5 | 1 |
| 928 | 196.73 | wind | 7.0 | 720 | < th | dose dependent | rect. | 1 | 5 |
| 930 | 196.73 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 5 | 11 |
| 932 | 196.74 | temperature | 20.0 | 720 | < th | dose independent | rect. | 4 | 1 |
| 938 | 196.75 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 20 | 13 |
| 980 | 196.82 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 4 | 4 |
| 990 | 196.84 | temperature | 30.0 | 90 | < th | dose independent | rect. | 21 | 17 |
| 999 | 196.85 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 2 | 18 |