BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0603300 Os03g0603300|AK102310
         (279 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0603300  Conserved hypothetical protein                      516   e-147
Os12g0574800  Bromodomain transcription factor containing pr...   247   7e-66

>Os03g0603300 Conserved hypothetical protein
          Length = 279

 Score =  516 bits (1329), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 256/279 (91%), Positives = 256/279 (91%)

Query: 1   ECXXXXXXXXXXXSVSARCLANSAVVKDMAVFVGASKESPFAGRPLPRFPVQRVPLHSTT 60
           EC           SVSARCLANSAVVKDMAVFVGASKESPFAGRPLPRFPVQRVPLHSTT
Sbjct: 1   ECGAAYYGFAGAASVSARCLANSAVVKDMAVFVGASKESPFAGRPLPRFPVQRVPLHSTT 60

Query: 61  SFAVLGRESGMSHVPEWLPAFPEPHTYVRSELWSEEVAKAGADEVERARQRRKAEKXXXX 120
           SFAVLGRESGMSHVPEWLPAFPEPHTYVRSELWSEEVAKAGADEVERARQRRKAEK    
Sbjct: 61  SFAVLGRESGMSHVPEWLPAFPEPHTYVRSELWSEEVAKAGADEVERARQRRKAEKSLLS 120

Query: 121 XXXXXXXXGADGFRPGMLVDDAVKANGLDVVESKANPFHERALPYGEKAVSEVTMPGVGK 180
                   GADGFRPGMLVDDAVKANGLDVVESKANPFHERALPYGEKAVSEVTMPGVGK
Sbjct: 121 LQRRLALAGADGFRPGMLVDDAVKANGLDVVESKANPFHERALPYGEKAVSEVTMPGVGK 180

Query: 181 TFSVVEAFAPAFEESKGGEFDEGMDQGQNDSQTQKRVVPKERPPVYFRIGIDKKSMVMAL 240
           TFSVVEAFAPAFEESKGGEFDEGMDQGQNDSQTQKRVVPKERPPVYFRIGIDKKSMVMAL
Sbjct: 181 TFSVVEAFAPAFEESKGGEFDEGMDQGQNDSQTQKRVVPKERPPVYFRIGIDKKSMVMAL 240

Query: 241 NSRALVELKDPWFFKEDKEQRAELILREAMDNPHELTQL 279
           NSRALVELKDPWFFKEDKEQRAELILREAMDNPHELTQL
Sbjct: 241 NSRALVELKDPWFFKEDKEQRAELILREAMDNPHELTQL 279



>Os12g0574800 Bromodomain transcription factor containing protein
          Length = 489

 Score =  247 bits (630), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 134/270 (49%), Positives = 174/270 (64%), Gaps = 7/270 (2%)

Query: 14  SVSARCLANSAVVKDMAVFVGASKESPFAGRPLPRFPVQRVPLHSTTSFAVLGRESGMSH 73
           + S RCL  S VV+++  +V +  E PF  RPLP FPV RV      SFA+ G+ESGM H
Sbjct: 223 ATSDRCLVGSGVVRELIDYVESKPEVPFV-RPLPSFPVPRVEPQPAQSFAMAGKESGMKH 281

Query: 74  VPEWLPAFPEPHTYVRSELWSEEVAKAGADEVERARQRRKAEKXXXXXXXXXXXXGADGF 133
           VPEWLP FP+PHTY+R+E+WSEE AKA  D+VE+ RQRRKAEK            GADGF
Sbjct: 282 VPEWLPVFPDPHTYIRTEVWSEEEAKARVDKVEQVRQRRKAEKSLLSLQRRLALAGADGF 341

Query: 134 RPGMLVDDAVKANGLDVVESKANPFHERALPYGEKAVSEVTMPGVGKTFSVVEAFAPAFE 193
           RP +  + A K   + V  SK NPF E ALP GEK VS+V M    +  SV++AFAPA +
Sbjct: 342 RPAVTENTAEKGKEIQVAGSKRNPFLEPALPPGEKEVSDVAMQPQRRKISVLDAFAPAIQ 401

Query: 194 ESKGGEFDEGMDQGQNDSQTQKRVVPKERPPVYFRIGIDKKSMVMALNSRALVELKDPWF 253
            +   + D G   G +++Q QK +VPKER PV+ +IGIDKK +   LNS+ L   +DP F
Sbjct: 402 AANMMDIDTG--PGWDNNQNQKSIVPKERAPVHLKIGIDKKPLSAVLNSKPLDLREDPSF 459

Query: 254 FKE----DKEQRAELILREAMDNPHELTQL 279
            KE    ++++RA +ILR +M+NP EL QL
Sbjct: 460 LKEEVKDERKRRAGMILRASMENPQELPQL 489



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,762,149
Number of extensions: 365102
Number of successful extensions: 763
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 760
Number of HSP's successfully gapped: 2
Length of query: 279
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 179
Effective length of database: 11,814,401
Effective search space: 2114777779
Effective search space used: 2114777779
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)