Os03g0603300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0603300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.1 | 0.286 | 9.85 | 0.3 | 0.052 | -0.604 | -0.379 | 0.828 | -0.155 | 5.23 | 24.8 | 4196 | -- | -- |
| 38.07 | 0.287 | 9.83 | 0.506 | 0.0552 | -0.468 | -0.368 | -- | -0.139 | 4.82 | 23 | 4001 | -- | -- |
| 37.43 | 0.285 | 9.85 | 0.299 | 0.0532 | -0.608 | -- | 0.829 | -0.155 | 4.67 | 24.8 | 4130 | -- | -- |
| 37.99 | 0.287 | 9.84 | 0.523 | 0.0443 | -0.538 | -- | -- | -0.108 | 4.15 | 24.6 | 4020 | -- | -- |
| 37.57 | 0.285 | 9.85 | 0.297 | -- | -0.611 | -- | 0.837 | -0.157 | -- | 24.8 | 4130 | -- | -- |
| 45.65 | 0.317 | 9.79 | 0.745 | 0.1 | -- | -0.343 | -- | 0.0385 | 4.05 | -- | -- | -- | -- |
| 45.92 | 0.317 | 9.79 | 0.749 | 0.101 | -- | -- | -- | 0.0405 | 2.76 | -- | -- | -- | -- |
| 38.06 | 0.287 | 9.83 | 0.525 | -- | -0.565 | -- | -- | -0.107 | -- | 24.5 | 4018 | -- | -- |
| 39.12 | 0.291 | 9.85 | -- | 0.0528 | -0.802 | -- | -- | -0.197 | 6.88 | 19.38 | 15381 | -- | -- |
| 46.51 | 0.319 | 9.79 | 0.753 | -- | -- | -- | -- | 0.043 | -- | -- | -- | -- | -- |
| 60.7 | 0.364 | 9.81 | -- | 0.116 | -- | -- | -- | -0.0429 | 2.82 | -- | -- | -- | -- |
| 39.18 | 0.292 | 9.85 | -- | -- | -0.826 | -- | -- | -0.215 | -- | 19.4 | 15356 | -- | -- |
| 61.47 | 0.366 | 9.81 | -- | -- | -- | -- | -- | -0.0405 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.44 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 6 |
| 2 | 35.46 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 2 |
| 3 | 35.47 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 4 |
| 10 | 35.58 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 7 |
| 11 | 35.60 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 5 |
| 17 | 35.63 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 9 |
| 31 | 35.81 | temperature | 20 | 720 | > th | dose dependent | rect. | 24 | 1 |
| 44 | 35.95 | temperature | 25 | 1440 | < th | dose independent | rect. | 23 | 12 |
| 45 | 35.96 | temperature | 25 | 4320 | < th | dose independent | sin | 12 | NA |
| 50 | 36.01 | temperature | 25 | 4320 | > th | dose independent | sin | 12 | NA |
| 56 | 36.04 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 74 | 36.13 | temperature | 10 | 270 | > th | dose dependent | sin | 7 | NA |
| 80 | 36.15 | temperature | 25 | 4320 | < th | dose independent | rect. | 14 | 15 |
| 101 | 36.23 | temperature | 25 | 4320 | > th | dose independent | rect. | 14 | 15 |
| 122 | 36.31 | temperature | 25 | 1440 | > th | dose independent | rect. | 23 | 12 |
| 123 | 36.31 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 4 |
| 157 | 36.43 | temperature | 20 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 186 | 36.52 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 9 |
| 190 | 36.52 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 6 |
| 216 | 36.58 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 11 |
| 230 | 36.62 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 254 | 36.66 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 11 |
| 255 | 36.66 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 12 |
| 277 | 36.71 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 17 |
| 281 | 36.72 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 20 |
| 341 | 36.81 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 6 |
| 361 | 36.84 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 13 |
| 449 | 36.93 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 4 |
| 604 | 37.12 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 726 | 37.24 | temperature | 25 | 4320 | < th | dose independent | no | NA | NA |
| 747 | 37.26 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 23 |
| 752 | 37.27 | temperature | 25 | 4320 | > th | dose independent | no | NA | NA |
| 813 | 37.32 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 23 |
| 848 | 37.35 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 23 |
| 933 | 37.43 | temperature | 30 | 4320 | < th | dose dependent | rect. | 24 | 1 |