BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0603300 Os03g0603300|AK102310
         (279 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G34340.1  | chr4:16426771-16427832 REVERSE LENGTH=354          105   3e-23
AT5G15570.1  | chr5:5066851-5067996 FORWARD LENGTH=382             61   8e-10
AT3G02160.1  | chr3:394615-395808 FORWARD LENGTH=398               59   3e-09

>AT4G34340.1 | chr4:16426771-16427832 REVERSE LENGTH=354
          Length = 353

 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/273 (31%), Positives = 133/273 (48%), Gaps = 42/273 (15%)

Query: 20  LANSAVVKDMAVFVGASKESPFAGRPLPRFPV-------QRVPLHSTTSFAVLGRESGMS 72
           L  S  ++++  FV +S+E PF+ +PLP FPV       + +P     SF  +G      
Sbjct: 110 LGRSIKLREIIDFVNSSEEVPFS-QPLPSFPVAISDRSRKMIP-----SFVEIGETPPGK 163

Query: 73  HVPEWLPAFPEPHTYVRSELWSEEVAKAGADEVERARQRRKAEKXXXXXXXXXXXXGADG 132
           H+P WLPAFP+PHTY  + +W E V+    D++E+ARQRRKAE+                
Sbjct: 164 HIPLWLPAFPDPHTYKETPMWIERVSDPRGDKIEQARQRRKAERALLSLQRKLVCK-ISS 222

Query: 133 FRPGMLVDDAVKANGLDVVESKANPFHERALPYGEKAVSEVTMPGVGKTFSVVEAFAPAF 192
             P     D VK       E + +    R++  GEK V  +   G+    SV+EAFAPA 
Sbjct: 223 RNPVWGDMDGVKE------EMRDDESELRSVSSGEK-VESLNRDGL----SVIEAFAPAM 271

Query: 193 EESKGGEFDEGMDQGQNDSQTQKRVVPKERPPVYFRIGIDKKSMVMALNSRALVELKD-P 251
           E ++ G   E   + +           K +P    ++  +KK +   L+    ++ +D P
Sbjct: 272 EAARDGFSSEAHTEWK-----------KNKPVALSKLRTEKKFLGQPLDLSLQMKGEDRP 320

Query: 252 WFF-----KEDKEQRAELILREAMDNPHELTQL 279
             F     ++DK +RAE ILR+ M+NP +L QL
Sbjct: 321 ISFVREEDRDDKRRRAEFILRQCMENPVDLNQL 353



>AT5G15570.1 | chr5:5066851-5067996 FORWARD LENGTH=382
          Length = 381

 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 111/277 (40%), Gaps = 58/277 (20%)

Query: 19  CLANSAVVKDMAVFVGASKESPFAGRPLPRFPVQRVPLHSTTSFAVLGRESGMSHVPEWL 78
           CLA+S VVKD+  + G ++E PF    LPRFP  R       SF+ +G E    H+P WL
Sbjct: 125 CLADSGVVKDIIRYTGEAEEIPFV-YSLPRFPFNRGK-RPAPSFSDIGVEPPDEHIPVWL 182

Query: 79  PAFPEPHTYVRSELWSEEVAKAGADEVERARQRRKAEKXXXXXXXXXXXXGADGFRPGML 138
           PAFPE     +    SEE+     D++ER  Q R                  D     M 
Sbjct: 183 PAFPE----TKMSNGSEEI---NVDKIERDVQSR------------------DNGSSLMS 217

Query: 139 VDDAVKANGLDVVES-------------KANPFHERALPYGEKAVS-------------E 172
           V  +V  + L V +S             + NPF    +  GEK VS             E
Sbjct: 218 VQQSVDVDRLKVQKSMDQKDVQKPIEEPEGNPFLAAPIWVGEKNVSLSRVVCPSELRKEE 277

Query: 173 VTMPGVGKTFSVVEAFAPAFEESKGGEFDEGMDQGQNDSQTQKRVVPKERPPVY-FRIGI 231
           ++   + +    +    PA E     +     ++       QKR   + +  +  F+IG 
Sbjct: 278 ISTNHLPEKHMSMSHHIPALEAYALSDKINDKNRLAGMEDEQKRDGARTQGALLRFKIGT 337

Query: 232 DKKSMVMALNSRALVELKDPWFFKEDKEQRAELILRE 268
            K S    +N      L++  +FKED  +R + + RE
Sbjct: 338 RKASECWKINQC----LEEKGWFKEDGNKREKKVERE 370



>AT3G02160.1 | chr3:394615-395808 FORWARD LENGTH=398
          Length = 397

 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 14  SVSARCLANSAVVKDMAVFVGASKESPFAGRPLPRFPVQRVPLHSTTSFAVLGRESGMSH 73
           S +  CLA+S VVKD+  + G ++E PF    LPRFP  +       SF+ +G E    H
Sbjct: 135 SDTDHCLADSGVVKDIIRYTGEAEEIPFV-YSLPRFPFSK-EKKPAPSFSEVGAEPPDEH 192

Query: 74  VPEWLPAFPEPHTYVRSE 91
           +P WLPAFPE     RSE
Sbjct: 193 IPVWLPAFPETELCDRSE 210



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,468,875
Number of extensions: 219102
Number of successful extensions: 550
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 548
Number of HSP's successfully gapped: 3
Length of query: 279
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 182
Effective length of database: 8,447,217
Effective search space: 1537393494
Effective search space used: 1537393494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)