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Os12g0574800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Bromodomain transcription factor containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.2 (0.0127) R2 : 0.0128
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.065 (0.0267) R2dN8 : 0.0165 R2N8 : 0.0128
σ : 0.239
deviance : 26.2
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
23.12 0.226 10.2 0.407 0.00502 -0.19 -0.191 -1.15 -0.000567 2.63 22.1 3194 -- --
23.74 0.229 10.2 0.296 0.0322 0.245 0.189 -- -0.0115 15.8 22.1 3194 -- --
23.18 0.224 10.2 0.397 0.0365 -0.171 -- -1.07 -0.000602 20.9 22.1 3162 -- --
23.6 0.226 10.2 0.402 0.025 0.199 -- -- 0.00698 15.8 13.26 11932 -- --
23.25 0.225 10.2 0.404 -- -0.203 -- -1.16 -0.00135 -- 21.91 3195 -- --
24.37 0.231 10.2 0.247 0.0185 -- -0.16 -- -0.038 0.882 -- -- -- --
24.42 0.231 10.2 0.254 0.0392 -- -- -- -0.0364 20.6 -- -- -- --
23.57 0.226 10.2 0.418 -- 0.215 -- -- 0.00229 -- 13.35 11985 -- --
25.04 0.233 10.2 -- 0.0375 -0.168 -- -- -0.115 20.4 35.74 47520 -- --
24.5 0.231 10.2 0.254 -- -- -- -- -0.0368 -- -- -- -- --
26.12 0.239 10.2 -- 0.0387 -- -- -- -0.0647 21.1 -- -- -- --
25.11 0.233 10.2 -- -- -0.168 -- -- -0.115 -- 45.44 47520 -- --
26.2 0.239 10.2 -- -- -- -- -- -0.065 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 22.47 temperature 15 720 > th dose dependent rect. 17 1
2 22.50 atmosphere 1010 90 < th dose independent rect. 19 10
3 22.51 radiation 1 720 < th dose dependent rect. 17 7
4 22.53 radiation 20 4320 < th dose independent rect. 1 5
6 22.54 atmosphere 1010 270 < th dose independent rect. 17 10
8 22.55 atmosphere 1010 720 < th dose independent rect. 17 1
9 22.55 temperature 10 270 > th dose dependent rect. 17 10
13 22.62 atmosphere 1015 1440 < th dose independent rect. 1 5
14 22.62 radiation 1 720 < th dose independent rect. 16 8
17 22.63 wind 1 30 < th dose dependent rect. 22 5
18 22.64 atmosphere 1010 720 < th dose independent rect. 15 4
19 22.64 radiation 20 4320 < th dose independent rect. 20 10
22 22.66 temperature 15 720 > th dose dependent rect. 15 5
30 22.68 wind 1 10 < th dose independent rect. 22 5
36 22.69 wind 1 10 < th dose independent rect. 11 16
39 22.69 temperature 10 720 > th dose dependent rect. 15 7
40 22.69 wind 1 30 < th dose dependent rect. 11 16
42 22.70 wind 1 10 > th dose independent sin 17 NA
47 22.71 wind 1 10 < th dose independent rect. 17 10
61 22.72 temperature 20 270 > th dose dependent rect. 23 3
64 22.73 radiation 1 720 > th dose independent rect. 16 3
95 22.76 wind 7 1440 < th dose independent rect. 6 3
99 22.77 temperature 20 720 > th dose independent rect. 4 19
102 22.77 temperature 15 270 > th dose dependent rect. 19 8
103 22.77 temperature 15 90 > th dose dependent rect. 19 10
104 22.77 humidity 50 30 > th dose dependent rect. 5 19
125 22.80 radiation 1 720 < th dose dependent rect. 10 14
138 22.81 radiation 1 720 < th dose dependent rect. 7 17
139 22.82 wind 7 4320 > th dose independent rect. 8 1
144 22.82 wind 7 4320 > th dose dependent rect. 8 1
145 22.82 atmosphere 1000 270 > th dose dependent rect. 24 2
172 22.84 temperature 25 720 > th dose independent rect. 15 7
176 22.84 temperature 30 720 < th dose dependent rect. 15 8
198 22.86 temperature 15 1440 > th dose independent rect. 23 2
208 22.86 temperature 15 270 > th dose independent rect. 16 11
213 22.86 temperature 15 90 > th dose independent rect. 7 22
215 22.86 atmosphere 1000 90 > th dose dependent rect. 24 4
228 22.87 temperature 25 720 < th dose independent rect. 14 9
235 22.87 temperature 30 720 < th dose dependent rect. 18 5
250 22.88 wind 7 4320 > th dose independent rect. 7 3
271 22.89 humidity 80 720 < th dose independent rect. 17 1
309 22.91 wind 1 10 < th dose independent sin 17 NA
311 22.91 atmosphere 1005 270 > th dose independent rect. 24 2
312 22.91 wind 1 10 > th dose independent rect. 22 10
313 22.91 humidity 50 14400 > th dose independent rect. 23 10
328 22.91 temperature 30 270 < th dose dependent rect. 16 14
334 22.92 temperature 20 1440 < th dose independent rect. 18 1
336 22.92 temperature 25 720 > th dose independent rect. 15 5
337 22.92 temperature 20 720 > th dose independent rect. 12 9
341 22.92 temperature 15 1440 > th dose independent rect. 9 15
347 22.92 temperature 30 720 < th dose dependent rect. 18 3
357 22.93 temperature 20 720 > th dose independent rect. 17 1
359 22.93 temperature 20 1440 > th dose independent rect. 13 6
364 22.93 temperature 20 720 < th dose independent rect. 5 16
365 22.93 temperature 20 1440 < th dose dependent rect. 18 1
366 22.93 temperature 20 10 > th dose dependent rect. 1 2
380 22.93 temperature 10 30 > th dose dependent rect. 8 21
393 22.94 atmosphere 1010 30 < th dose independent rect. 8 21
405 22.94 humidity 50 90 > th dose dependent rect. 3 22
406 22.95 temperature 20 720 < th dose independent sin 22 NA
409 22.95 atmosphere 1005 90 > th dose independent rect. 24 5
418 22.95 radiation 1 720 < th dose independent rect. 10 14
421 22.95 temperature 10 720 > th dose dependent rect. 5 1
441 22.96 wind 9 270 < th dose independent rect. 1 23
442 22.96 temperature 20 720 > th dose dependent sin 16 NA
463 22.97 temperature 20 1440 > th dose independent sin 23 NA
466 22.97 temperature 20 4320 < th dose independent rect. 18 5
474 22.97 temperature 10 720 > th dose dependent sin 17 NA
510 22.98 temperature 15 90 > th dose independent rect. 19 10
521 22.98 temperature 30 720 < th dose dependent sin 17 NA
536 22.98 temperature 25 270 < th dose dependent rect. 12 18
588 23.00 temperature 10 1440 > th dose independent rect. 1 5
591 23.00 temperature 30 1440 < th dose independent rect. 1 5
595 23.00 humidity 50 1440 > th dose independent rect. 1 5
604 23.00 atmosphere 995 1440 > th dose independent rect. 1 5
615 23.00 temperature 20 4320 > th dose independent rect. 17 6
617 23.00 temperature 20 1440 < th dose independent rect. 13 7
618 23.00 temperature 20 4320 > th dose independent rect. 15 8
633 23.00 temperature 10 1440 > th dose independent rect. 6 19
742 23.02 humidity 50 720 > th dose dependent rect. 18 6
769 23.03 temperature 25 720 > th dose independent sin 17 NA
771 23.03 humidity 90 270 < th dose independent rect. 24 1
785 23.03 humidity 50 14400 > th dose independent rect. 19 11
827 23.04 humidity 50 14400 > th dose independent rect. 6 3
840 23.04 humidity 80 1440 < th dose independent rect. 21 19
877 23.05 wind 9 14400 < th dose independent rect. 23 2
898 23.05 humidity 80 90 > th dose independent rect. 5 19
904 23.05 temperature 20 1440 < th dose dependent rect. 15 6
922 23.06 temperature 20 4320 > th dose independent sin 18 NA
923 23.06 temperature 20 4320 < th dose independent sin 18 NA
925 23.06 temperature 20 4320 > th dose independent rect. 20 3
935 23.06 humidity 80 90 > th dose independent rect. 22 10