BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0589400 Os03g0589400|J075007C10
         (122 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0589400  Hypothetical protein                                141   1e-34
Os03g0589100  Conserved hypothetical protein                       94   2e-20
Os03g0590600                                                       70   4e-13
Os03g0589701                                                       66   5e-12
Os10g0570900                                                       62   1e-10

>Os03g0589400 Hypothetical protein
          Length = 122

 Score =  141 bits (356), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 87/110 (79%), Positives = 87/110 (79%)

Query: 13  LQELIAELMEAGPXXXXXXXXXXXITATALSEATEYLEEEIVQALQKHAATAEAEIAESQ 72
           LQELIAELMEAGP           ITATALSEATEYLEEEIVQALQKHAATAEAEIAESQ
Sbjct: 13  LQELIAELMEAGPEEEADDRECEEITATALSEATEYLEEEIVQALQKHAATAEAEIAESQ 72

Query: 73  AFSAVLLADANRAASPVVVVHKRPTPETEKXXXXXXXXXXXXTGDSAAQD 122
           AFSAVLLADANRAASPVVVVHKRPTPETEK            TGDSAAQD
Sbjct: 73  AFSAVLLADANRAASPVVVVHKRPTPETEKEQDQEPPRQRRRTGDSAAQD 122



>Os03g0589100 Conserved hypothetical protein
          Length = 276

 Score = 94.0 bits (232), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/73 (82%), Positives = 60/73 (82%)

Query: 50  EEEIVQALQKHAATAEAEIAESQAFSAVLLADANRAASPVVVVHKRPTPETEKXXXXXXX 109
           E EIVQALQKHAATAEAEIAESQAFSAVLLADANRAASPVVVVHKRPTPETEK       
Sbjct: 204 EGEIVQALQKHAATAEAEIAESQAFSAVLLADANRAASPVVVVHKRPTPETEKEQDQEPP 263

Query: 110 XXXXXTGDSAAQD 122
                TGDSAAQD
Sbjct: 264 RQRRRTGDSAAQD 276



>Os03g0590600 
          Length = 283

 Score = 69.7 bits (169), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/76 (73%), Positives = 56/76 (73%), Gaps = 3/76 (3%)

Query: 50  EEEIVQALQKHAATAEAEIAESQAFSAVLLADANRAASPVVVVHKRPTPETEKXXXXXXX 109
           EEEIVQAL KHAATAEAEIAESQAFSAVLLADANRAA PVVVV KRP PETE        
Sbjct: 208 EEEIVQALNKHAATAEAEIAESQAFSAVLLADANRAAIPVVVVQKRPAPETETETEEEPP 267

Query: 110 XXXXXT---GDSAAQD 122
                T   GDSAAQD
Sbjct: 268 RQRRRTGDAGDSAAQD 283



>Os03g0589701 
          Length = 225

 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/78 (67%), Positives = 54/78 (69%), Gaps = 5/78 (6%)

Query: 50  EEEIVQALQKHAATAEAEIAESQAFSAVLLADANRAASPVVVVHKRP-----TPETEKXX 104
           EEEIVQAL KHAATAEAEIAESQAFSAVLLADANRAA  VVVVHKRP     T   E+  
Sbjct: 148 EEEIVQALNKHAATAEAEIAESQAFSAVLLADANRAAILVVVVHKRPAPETETETEEEEE 207

Query: 105 XXXXXXXXXXTGDSAAQD 122
                      GDSAAQD
Sbjct: 208 PPRQRRGTGDAGDSAAQD 225



>Os10g0570900 
          Length = 279

 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/76 (71%), Positives = 56/76 (73%), Gaps = 3/76 (3%)

Query: 50  EEEIVQALQKHAATAEAEIAESQAFSAVLLADANRAASPVVVVHKRPTPETEKXXXXXXX 109
           EEE+VQALQKHAATAEAEIAE+QAFSAVLLADANR ASPVVVV KR  PETE        
Sbjct: 204 EEELVQALQKHAATAEAEIAEAQAFSAVLLADANRTASPVVVVQKRAAPETETETEEEPP 263

Query: 110 XXXXXT---GDSAAQD 122
                T   GDSAAQD
Sbjct: 264 RQRRRTGDAGDSAAQD 279



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.305    0.118    0.297 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,357,013
Number of extensions: 61965
Number of successful extensions: 188
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 6
Length of query: 122
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 34
Effective length of database: 12,440,969
Effective search space: 422992946
Effective search space used: 422992946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 149 (62.0 bits)