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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0589100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.85 (0.0505) R2 : 0.512
β1 : 2.19 (0.21) R2dD : 0.166 R2D : -0.115
β2 : 1.84 (0.121) R2dC : 0.248 R2C : 0.237
β3 : -3.35 (0.221) R2dE : 0.372 R2E : 0.0467
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.778 (0.116) R2dN8 : 0.0789 R2N8 : -0.069
σ : 0.918
deviance : 388.6
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_____
C
peak time of C : 9.22
E
wheather : temperature
threshold : 13.1
memory length : 6003
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
387.4 0.925 4.8 2.48 1.84 -3.16 -0.0809 1.2 0.86 9.24 14.52 6026 -- --
388.83 0.918 4.86 2.29 1.85 -3.37 -0.159 -- 0.776 9.17 13.28 5997 -- --
387.42 0.917 4.8 2.48 1.84 -3.15 -- 1.21 0.859 9.25 14.62 6027 -- --
388.6 0.918 4.85 2.19 1.84 -3.35 -- -- 0.778 9.22 13.1 6003 -- --
537.7 1.08 4.86 2.23 -- -3.24 -- 1.77 0.848 -- 18.11 2207 -- --
584.76 1.13 5.02 0.542 1.87 -- 0.127 -- 0.0124 9.34 -- -- -- --
584.82 1.13 5.02 0.546 1.87 -- -- -- 0.0125 9.33 -- -- -- --
540.46 1.08 4.94 1.77 -- -3.42 -- -- 0.709 -- 15.53 2217 -- --
464.34 1 4.96 -- 1.85 -2.14 -- -- 0.352 9.23 19.95 1593 -- --
788.21 1.31 5.07 0.537 -- -- -- -- 0.02 -- -- -- -- --
592.69 1.14 5.04 -- 1.87 -- -- -- -0.0484 9.3 -- -- -- --
544.33 1.09 4.98 -- -- -3.21 -- -- 0.432 -- 18.29 760 -- --
795.82 1.32 5.09 -- -- -- -- -- -0.0396 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 380.20 temperature 10 720 > th dose dependent rect. 16 17
9 384.49 temperature 30 720 < th dose dependent rect. 17 16
18 386.70 radiation 1 43200 > th dose independent rect. 18 11
31 388.89 radiation 1 43200 > th dose independent rect. 18 1
50 391.18 temperature 30 720 < th dose dependent sin 11 NA
52 391.23 temperature 20 720 > th dose dependent sin 11 NA
70 393.16 radiation 1 43200 < th dose independent rect. 18 11
76 394.37 radiation 1 43200 < th dose independent rect. 18 6
78 394.40 radiation 1 43200 < th dose independent rect. 18 2
81 394.42 radiation 1 43200 < th dose independent rect. 18 9
88 394.57 temperature 30 270 < th dose dependent sin 8 NA
105 395.11 temperature 15 270 > th dose dependent sin 8 NA
108 395.33 temperature 30 4320 < th dose dependent rect. 22 1
109 395.49 temperature 10 4320 > th dose dependent rect. 22 1
113 395.98 temperature 10 4320 > th dose dependent rect. 17 16
114 396.01 temperature 10 4320 > th dose dependent rect. 17 11
121 396.26 temperature 30 4320 < th dose dependent rect. 18 15
131 396.36 temperature 10 4320 > th dose dependent sin 12 NA
137 396.44 temperature 30 4320 < th dose dependent rect. 18 10
167 396.68 temperature 20 14400 < th dose dependent rect. 4 1
175 396.75 temperature 20 14400 < th dose dependent rect. 3 3
179 396.78 temperature 25 43200 < th dose dependent rect. 18 1
186 396.80 temperature 30 4320 < th dose dependent sin 11 NA
197 396.84 temperature 30 4320 < th dose dependent rect. 21 12
203 396.89 temperature 10 4320 > th dose dependent rect. 21 12
229 397.03 humidity 90 43200 < th dose independent rect. 18 1
255 397.10 temperature 20 43200 > th dose independent sin 19 NA
262 397.12 temperature 20 43200 > th dose independent rect. 8 18
277 397.15 temperature 20 43200 > th dose independent rect. 12 12
310 397.28 temperature 30 4320 < th dose dependent rect. 21 6
315 397.30 temperature 20 43200 < th dose independent rect. 2 16
317 397.31 temperature 20 43200 > th dose independent rect. 2 18
326 397.35 temperature 20 43200 > th dose independent rect. 2 16
327 397.35 temperature 10 4320 > th dose dependent rect. 21 6
334 397.36 temperature 20 43200 > th dose independent rect. 5 18
373 397.44 temperature 20 43200 < th dose independent rect. 8 19
384 397.45 temperature 10 4320 > th dose dependent rect. 21 4
404 397.50 temperature 20 43200 < th dose independent sin 2 NA
412 397.52 temperature 20 43200 > th dose independent sin 2 NA
483 397.69 temperature 20 43200 > th dose independent rect. 5 11
520 397.75 temperature 20 43200 < th dose independent sin 18 NA
521 397.75 temperature 20 43200 < th dose independent rect. 5 11
561 397.85 radiation 1 14400 > th dose independent rect. 18 16
606 397.95 temperature 20 43200 < th dose independent rect. 12 13
770 398.23 temperature 25 43200 < th dose dependent rect. 10 13
778 398.25 radiation 1 14400 > th dose independent sin 10 NA
856 398.36 temperature 25 43200 < th dose dependent sin 18 NA
866 398.38 radiation 1 43200 < th dose dependent rect. 17 3
875 398.39 radiation 1 43200 < th dose dependent rect. 17 6
904 398.45 radiation 1 14400 > th dose independent rect. 16 18
910 398.46 temperature 20 43200 > th dose independent no NA NA
984 398.55 temperature 20 43200 > th dose independent rect. 19 23
999 398.57 temperature 20 43200 < th dose independent no NA NA