BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0589100 Os03g0589100|Os03g0589100
(276 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0589100 Conserved hypothetical protein 470 e-133
Os03g0590600 407 e-114
Os10g0571000 356 1e-98
Os10g0570900 275 2e-74
Os03g0589701 273 8e-74
Os02g0735400 177 7e-45
Os03g0589400 Hypothetical protein 94 1e-19
>Os03g0589100 Conserved hypothetical protein
Length = 276
Score = 470 bits (1210), Expect = e-133, Method: Compositional matrix adjust.
Identities = 252/264 (95%), Positives = 252/264 (95%)
Query: 13 LQELIDELMEDDAEDREHEEISATALSEATEYLVDPDPPSPEQVGWAEGAVISAQSAADN 72
LQELIDELMEDDAEDREHEEISATALSEATEYLVDPDPPSPEQVGWAEGAVISAQSAADN
Sbjct: 13 LQELIDELMEDDAEDREHEEISATALSEATEYLVDPDPPSPEQVGWAEGAVISAQSAADN 72
Query: 73 MASYVLDLRRALAVFAGTGRPEEAVLRKHVAWADARRAEAVEIASAARRLLEKELRCMAA 132
MASYVLDLRRALAVFAGTGRPEEAVLRKHVAWADARRAEAVEIASAARRLLEKELRCMAA
Sbjct: 73 MASYVLDLRRALAVFAGTGRPEEAVLRKHVAWADARRAEAVEIASAARRLLEKELRCMAA 132
Query: 133 RDHPVIPELAALITAMRVSTKSLVLQDSGGDAVRSRKAGLLASAIKFEDAVVEKMTVLKE 192
RDHPVIPELAALITAMRVSTKSLVLQDSGGDAVRSRKAGLLASAIKFEDAVVEKMTVLKE
Sbjct: 133 RDHPVIPELAALITAMRVSTKSLVLQDSGGDAVRSRKAGLLASAIKFEDAVVEKMTVLKE 192
Query: 193 KLTRGAAAFAGEGEIVQALQKHAATAEAEIAESQAFSAVLLADANRAASPVVVVHKRPTP 252
KLTRGAAAFAGEGEIVQALQKHAATAEAEIAESQAFSAVLLADANRAASPVVVVHKRPTP
Sbjct: 193 KLTRGAAAFAGEGEIVQALQKHAATAEAEIAESQAFSAVLLADANRAASPVVVVHKRPTP 252
Query: 253 ETEKXXXXXXXXXXXXTGDSAAQD 276
ETEK TGDSAAQD
Sbjct: 253 ETEKEQDQEPPRQRRRTGDSAAQD 276
>Os03g0590600
Length = 283
Score = 407 bits (1046), Expect = e-114, Method: Compositional matrix adjust.
Identities = 235/271 (86%), Positives = 238/271 (87%), Gaps = 7/271 (2%)
Query: 13 LQELIDELM----EDDAEDREHEEISATALSEATEYLVDPDPPSPEQVGWAEGAVISAQS 68
LQELIDELM ED+A+DRE EEISATALSEATEYL DPDPPSPEQVGWAEGAVISAQS
Sbjct: 13 LQELIDELMNAGPEDEADDREVEEISATALSEATEYLEDPDPPSPEQVGWAEGAVISAQS 72
Query: 69 AADNMASYVLDLRRALAVFAGTGRPEEAVLRKHVAWADARRAEAVEIASAARRLLEKELR 128
AADNMASY LDLRRALAVFAGTGRPEEAVLRK+VAWADARRAEAVEIASAARRLLEKELR
Sbjct: 73 AADNMASYALDLRRALAVFAGTGRPEEAVLRKNVAWADARRAEAVEIASAARRLLEKELR 132
Query: 129 CMAARDHPVIPELAALITAMRVSTKSLVLQDSGGDAVRSRKAGLLASAIKFEDAVVEKMT 188
CMAARDHPVIPELAALITAMR STKSLVLQDSGGDAVRSRK GLL SAIKFEDAVV KMT
Sbjct: 133 CMAARDHPVIPELAALITAMRDSTKSLVLQDSGGDAVRSRKVGLLDSAIKFEDAVVGKMT 192
Query: 189 VLKEKLTRGAAAFAGEGEIVQALQKHAATAEAEIAESQAFSAVLLADANRAASPVVVVHK 248
LKEKLTRGAAAFAGE EIVQAL KHAATAEAEIAESQAFSAVLLADANRAA PVVVV K
Sbjct: 193 ALKEKLTRGAAAFAGEEEIVQALNKHAATAEAEIAESQAFSAVLLADANRAAIPVVVVQK 252
Query: 249 RPTPETEKXXXXXXXXXXXXT---GDSAAQD 276
RP PETE T GDSAAQD
Sbjct: 253 RPAPETETETEEEPPRQRRRTGDAGDSAAQD 283
>Os10g0571000
Length = 272
Score = 356 bits (913), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 212/269 (78%), Positives = 224/269 (83%), Gaps = 14/269 (5%)
Query: 13 LQELIDELM----EDDAEDREHEEISATALSEATEYLVDPDPPSPEQVGWAEGAVISAQS 68
LQ+LIDELM ED+A+DRE EEI+A ALSEATEYL DPDPPSPEQVGWAEGAVISAQS
Sbjct: 13 LQDLIDELMNAGPEDEADDRECEEITAKALSEATEYLEDPDPPSPEQVGWAEGAVISAQS 72
Query: 69 AADNMASYVLDLRRALAVFAGTGRPEEAVLRKHVAWADARRAEAVEIASAARRLLEKELR 128
AADNMASYVLDLRRALAVFAGTGRPEEAVLRK+VAWADARRAEAVEIASAARRLLEKELR
Sbjct: 73 AADNMASYVLDLRRALAVFAGTGRPEEAVLRKNVAWADARRAEAVEIASAARRLLEKELR 132
Query: 129 CMAARDHPVIPELAALITAMRVSTKSLVLQD-SGGDAVRSRKAGLLASAIKFEDAVVEKM 187
CMAARDHPVIPELAALITAMR STKS VLQD SGGDAV R+AGLL SAIKFEDAVVEKM
Sbjct: 133 CMAARDHPVIPELAALITAMRESTKSRVLQDSSGGDAV--RRAGLLDSAIKFEDAVVEKM 190
Query: 188 TVLKEKLTRGAAAFAGEGEIVQALQKHAATAEAEIAESQAFSAVLLADANRAASPVVVVH 247
T LKEK TRGAAAFAGE E+VQALQKHAATAEAEIAE+QAFSA L +A+ +V V
Sbjct: 191 TALKEKFTRGAAAFAGEEELVQALQKHAATAEAEIAEAQAFSATL------SAASLVFVQ 244
Query: 248 KRPTPETEKXXXXXXXXXXXXTGDSAAQD 276
KR + GDSAAQD
Sbjct: 245 KR-PAPETEEEPPRQKRRTGDAGDSAAQD 272
>Os10g0570900
Length = 279
Score = 275 bits (703), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 192/269 (71%), Positives = 206/269 (76%), Gaps = 7/269 (2%)
Query: 13 LQELIDELMEDDAEDREHEEISATALSEATEYLVDPDPPSPEQVGWAEGAVISAQSAADN 72
LQELI ELME D +D E E+ T LS AT YL DPDPPSPE WA ++ AD
Sbjct: 13 LQELIAELMEADLQDPELEQSLTTVLSLATNYLDDPDPPSPELADWAATLETNSTIIADG 72
Query: 73 MASYVLDLRRALAVFAGTGRPEEAVLRKHVAWADARRAEAVEIASAARRLLEKELRCMAA 132
+AS +LD RR LAVFAGTGRPE+AVLRKHVAW DARRA+A +IASAARRLLEKELRC AA
Sbjct: 73 LASRLLDFRRGLAVFAGTGRPEKAVLRKHVAWVDARRADAADIASAARRLLEKELRCFAA 132
Query: 133 RDHPVIPELAALITAMRVSTKSLVLQD-SGGDAVRSRKAGLLASAIKFEDAVVEKMTVLK 191
RDHPV PE+A LITAMR STKS VLQD SGGDAV R+AGLL AIKFEDAVVE+MT LK
Sbjct: 133 RDHPVDPEVAELITAMRESTKSRVLQDSSGGDAV--RRAGLLDIAIKFEDAVVEEMTALK 190
Query: 192 EKLTRGAAA-FAGEGEIVQALQKHAATAEAEIAESQAFSAVLLADANRAASPVVVVHKRP 250
EKLTRGAA FAGE E+VQALQKHAATAEAEIAE+QAFSAVLLADANR ASPVVVV KR
Sbjct: 191 EKLTRGAAVFFAGEEELVQALQKHAATAEAEIAEAQAFSAVLLADANRTASPVVVVQKRA 250
Query: 251 TPETEKXXXXXXXXXXXXT---GDSAAQD 276
PETE T GDSAAQD
Sbjct: 251 APETETETEEEPPRQRRRTGDAGDSAAQD 279
>Os03g0589701
Length = 225
Score = 273 bits (699), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 165/229 (72%), Positives = 171/229 (74%), Gaps = 40/229 (17%)
Query: 22 EDDAEDREHEEISATALSEATEYLVDPDPPSPEQVGWAEGAVISAQSAADNMASYVLDLR 81
E +A+DRE EEI+ATALSEATEYL DP+PPSPEQVGWAEGAVISAQSAADNMASYVLDLR
Sbjct: 6 EKEADDRECEEITATALSEATEYLEDPEPPSPEQVGWAEGAVISAQSAADNMASYVLDLR 65
Query: 82 RALAVFAGTGRPEEAVLRKHVAWADARRAEAVEIASAARRLLEKELRCMAARDHPVIPEL 141
R LAVFAGTGRPEEAVLRK+VAWADARRA +A
Sbjct: 66 RGLAVFAGTGRPEEAVLRKNVAWADARRA------------------ALAGEG------- 100
Query: 142 AALITAMRVSTKSLVLQDSGGDAVRSRKAGLLASAIKFEDAVVEKMTVLKEKLTRGAAAF 201
QDSG DAVRSRKAGLL SAIKFEDAVV KMT LKEKLTRGAAAF
Sbjct: 101 ---------------AQDSGDDAVRSRKAGLLDSAIKFEDAVVGKMTALKEKLTRGAAAF 145
Query: 202 AGEGEIVQALQKHAATAEAEIAESQAFSAVLLADANRAASPVVVVHKRP 250
GE EIVQAL KHAATAEAEIAESQAFSAVLLADANRAA VVVVHKRP
Sbjct: 146 VGEEEIVQALNKHAATAEAEIAESQAFSAVLLADANRAAILVVVVHKRP 194
>Os02g0735400
Length = 283
Score = 177 bits (449), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 139/282 (49%), Positives = 164/282 (58%), Gaps = 27/282 (9%)
Query: 13 LQELIDELM----EDDAEDREHEEISATALSEATEYLVDPDPPSPEQVGWAEGAVISAQS 68
L+ELIDELM ED+A+DR+ EE AT LS T+YL DPDPPSPE WA A AQ
Sbjct: 11 LRELIDELMNTGPEDEADDRDFEESMATVLSMVTDYLDDPDPPSPELADWAAAAESGAQK 70
Query: 69 AADNMASYVLDLRRALAVFAGTGRPEEAVLRKHVAWADARRAEAVEIASAARRLLEKELR 128
AD +AS V +LRR L+VFAGTGRPEEAVLRKH AW DARRAEA IASAARRL EK+LR
Sbjct: 71 VADGLASRVENLRRGLSVFAGTGRPEEAVLRKHAAWTDARRAEAAGIASAARRLREKDLR 130
Query: 129 CMAARDHPVIPELAALITAMRVSTKSLVLQDSGGDAVRSRKAGLLASAIKFEDAVV---E 185
+AAR V P +A LI ++ + +S V + LA + E V
Sbjct: 131 SLAARGGLVNPRMAELIASVSDAMESDVRHGHVPSPAQ------LAEVERLEGRVAVASV 184
Query: 186 KMTVLKEKLTRGAAAFAGE-GE--IVQALQKH-------AATAEAEIAESQAFSAVLLAD 235
+ +LK KLTRGAAAFAG GE + QAL+ H A A A + F A L AD
Sbjct: 185 RAILLKVKLTRGAAAFAGRPGEEALAQALRGHAAAAEAQLAAARAFAGALRRFRA-LSAD 243
Query: 236 ANRAASPVVV-VHKRPTPETEKXXXXXXXXXXXXTGDSAAQD 276
AN ++P VHKRP+PETE T DS QD
Sbjct: 244 AN--SNPTATRVHKRPSPETEDDLAAPPPRQRRRTLDSGVQD 283
>Os03g0589400 Hypothetical protein
Length = 122
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/73 (82%), Positives = 60/73 (82%)
Query: 204 EGEIVQALQKHAATAEAEIAESQAFSAVLLADANRAASPVVVVHKRPTPETEKXXXXXXX 263
E EIVQALQKHAATAEAEIAESQAFSAVLLADANRAASPVVVVHKRPTPETEK
Sbjct: 50 EEEIVQALQKHAATAEAEIAESQAFSAVLLADANRAASPVVVVHKRPTPETEKEQDQEPP 109
Query: 264 XXXXXTGDSAAQD 276
TGDSAAQD
Sbjct: 110 RQRRRTGDSAAQD 122
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.125 0.335
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,222,222
Number of extensions: 315433
Number of successful extensions: 1223
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1212
Number of HSP's successfully gapped: 8
Length of query: 276
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 177
Effective length of database: 11,866,615
Effective search space: 2100390855
Effective search space used: 2100390855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 155 (64.3 bits)