BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0578500 Os03g0578500|Os03g0578500
         (150 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0578500  Conserved hypothetical protein                      218   2e-57
Os07g0562800  Myosin heavy chain class VIII A1 protein             71   4e-13

>Os03g0578500 Conserved hypothetical protein
          Length = 150

 Score =  218 bits (554), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 131/150 (87%), Positives = 131/150 (87%)

Query: 1   MREKGQRGGGGSDAGEGVTWRRWRWXXXXXXXXXXXXXXXXXXXSVVTAGCRASARLRRP 60
           MREKGQRGGGGSDAGEGVTWRRWRW                   SVVTAGCRASARLRRP
Sbjct: 1   MREKGQRGGGGSDAGEGVTWRRWRWPRRGAEEEAGPPAGACGCGSVVTAGCRASARLRRP 60

Query: 61  GAARTSGSAQEEEPDDEVAATMMSGQVGSNMNLDGELRKIKDQFATWKKDYKSRLKETKA 120
           GAARTSGSAQEEEPDDEVAATMMSGQVGSNMNLDGELRKIKDQFATWKKDYKSRLKETKA
Sbjct: 61  GAARTSGSAQEEEPDDEVAATMMSGQVGSNMNLDGELRKIKDQFATWKKDYKSRLKETKA 120

Query: 121 DKMTTTMSSIVNGGAGTRPEFSLSKKGLYM 150
           DKMTTTMSSIVNGGAGTRPEFSLSKKGLYM
Sbjct: 121 DKMTTTMSSIVNGGAGTRPEFSLSKKGLYM 150



>Os07g0562800 Myosin heavy chain class VIII A1 protein
          Length = 1219

 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/52 (67%), Positives = 39/52 (75%)

Query: 70   QEEEPDDEVAATMMSGQVGSNMNLDGELRKIKDQFATWKKDYKSRLKETKAD 121
            Q  E D      + SGQVGSNMN D ELRK+KD+FATWKKDYKSRLKETK +
Sbjct: 1148 QVFEDDAGFLVAVKSGQVGSNMNPDDELRKLKDRFATWKKDYKSRLKETKVN 1199



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.311    0.127    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,159,920
Number of extensions: 178500
Number of successful extensions: 1236
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1235
Number of HSP's successfully gapped: 2
Length of query: 150
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 58
Effective length of database: 12,232,113
Effective search space: 709462554
Effective search space used: 709462554
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 151 (62.8 bits)