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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0578500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.44 (0.0404) R2 : 0.823
β1 : 1.01 (0.148) R2dD : 0.0191 R2D : 0.0135
β2 : 4.23 (0.0992) R2dC : 0.725 R2C : 0.723
β3 : -1.67 (0.135) R2dE : 0.0645 R2E : 0.0633
β4 : 2.52 (0.398) R2dD*C : 0.0159 R2D*C : 0.00961
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0578 (0.0862) R2dN8 : 0.000195 R2N8 : -0.00448
σ : 0.755
deviance : 259.1
__
_____
C
peak time of C : 9.38
E
wheather : radiation
threshold : 4.64
memory length : 16
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 20.9
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
261.87 0.76 4.44 1.02 4.26 -1.74 2.57 0.435 0.0492 9.36 4.691 16 21.1 --
259.1 0.755 4.44 1.01 4.23 -1.67 2.52 -- 0.0578 9.38 4.64 16 20.9 --
282.25 0.788 4.44 1.1 4.21 -1.63 -- 0.0764 0.0645 9.41 4.334 16 20.9 --
281.93 0.787 4.44 1.1 4.22 -1.64 -- -- 0.065 9.44 4.274 16 20.7 --
331.98 0.853 4.56 1.06 -- -4.07 -- -2.31 0.0647 -- 48.26 2 8.08 --
318.31 0.836 4.44 1.01 4.29 -- 2.36 -- 0.119 10.1 -- -- -- --
340.28 0.864 4.43 1.1 4.28 -- -- -- 0.125 10.1 -- -- -- --
339.85 0.859 4.55 1.1 -- -4.26 -- -- 0.115 -- 323.8 2 7.92 --
313.69 0.829 4.47 -- 4.21 -1.65 -- -- -0.0574 9.42 4.274 16 20.7 --
1449.29 1.78 4.55 1.05 -- -- -- -- 0.118 -- -- -- -- --
372.43 0.903 4.46 -- 4.28 -- -- -- 0.00149 10.1 -- -- -- --
371.79 0.898 4.57 -- -- -4.25 -- -- -0.0075 -- 283.6 3 7.96 --
1478.14 1.79 4.57 -- -- -- -- -- 0.00154 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 253.97 precipitation 0.1 270 < th dose independent rect. 3 10
2 253.97 precipitation 0.1 270 < th dose dependent rect. 3 10
3 256.88 radiation 10.0 10 < th dose dependent rect. 24 19
4 257.96 humidity 50.0 270 > th dose independent rect. 3 10
5 258.31 temperature 10.0 270 > th dose independent rect. 3 10
6 258.31 atmosphere 995.0 270 > th dose independent rect. 3 10
7 258.31 atmosphere 1015.0 270 < th dose independent rect. 3 10
8 258.31 temperature 10.0 270 > th dose independent rect. 13 14
9 259.47 wind 9.0 270 < th dose independent rect. 13 14
12 259.97 radiation 1.0 30 < th dose independent rect. 24 19
14 260.73 wind 9.0 270 < th dose independent rect. 3 10
15 260.85 precipitation 0.1 270 < th dose independent rect. 13 14
16 260.85 precipitation 0.1 270 < th dose dependent rect. 13 14
22 262.42 temperature 20.0 90 > th dose independent rect. 24 19
24 262.74 temperature 10.0 270 > th dose dependent rect. 19 2
26 263.15 wind 9.0 270 < th dose independent rect. 21 22
27 263.26 temperature 10.0 90 > th dose dependent rect. 19 5
34 263.82 wind 1.0 270 > th dose independent rect. 19 2
35 264.01 humidity 60.0 270 > th dose independent rect. 19 2
36 264.08 wind 9.0 270 < th dose independent rect. 19 2
37 264.08 temperature 10.0 270 > th dose independent rect. 19 2
38 264.08 temperature 30.0 270 < th dose independent rect. 19 2
40 264.08 atmosphere 995.0 270 > th dose independent rect. 19 2
41 264.08 radiation 1.0 270 < th dose independent rect. 19 2
46 264.08 temperature 10.0 270 > th dose independent rect. 21 22
47 264.08 radiation 1.0 270 < th dose dependent rect. 19 2
54 264.35 precipitation 0.1 270 < th dose independent rect. 19 2
55 264.35 precipitation 0.1 270 < th dose dependent rect. 19 2
59 264.78 atmosphere 1015.0 270 < th dose independent rect. 19 2
60 264.81 temperature 15.0 270 > th dose dependent rect. 24 2
64 265.11 temperature 10.0 270 > th dose dependent rect. 23 4
66 265.18 wind 9.0 270 < th dose independent rect. 22 20
90 266.23 wind 9.0 90 < th dose independent rect. 24 19
97 266.40 radiation 1.0 30 < th dose independent rect. 24 8
102 266.41 radiation 1.0 30 < th dose independent sin 3 NA
116 266.50 atmosphere 995.0 270 > th dose independent rect. 13 14
121 266.67 radiation 1.0 30 > th dose independent sin 3 NA
137 267.26 precipitation 0.1 270 < th dose independent rect. 3 20
138 267.26 precipitation 0.1 270 < th dose dependent rect. 3 20
140 267.35 radiation 1.0 30 > th dose independent rect. 5 10
152 267.38 temperature 30.0 90 < th dose independent rect. 19 5
168 267.42 atmosphere 1015.0 90 < th dose independent rect. 24 19
179 267.66 precipitation 0.1 90 < th dose independent rect. 5 10
180 267.66 precipitation 0.1 90 < th dose dependent rect. 5 10
193 268.19 humidity 50.0 270 > th dose independent rect. 17 6
196 268.24 radiation 10.0 10 < th dose dependent rect. 24 9
211 268.52 wind 9.0 10 < th dose independent rect. 24 19
219 268.62 temperature 10.0 270 > th dose independent rect. 17 6
228 268.74 precipitation 0.1 270 < th dose independent rect. 17 6
229 268.74 precipitation 0.1 270 < th dose dependent rect. 17 6
231 268.78 humidity 80.0 270 > th dose independent rect. 23 4
234 268.84 temperature 10.0 90 > th dose independent rect. 5 10
235 268.84 atmosphere 1015.0 90 < th dose independent rect. 5 10
236 268.84 temperature 10.0 90 > th dose independent rect. 15 14
237 268.85 wind 9.0 270 < th dose independent rect. 17 6
250 268.95 humidity 50.0 90 > th dose independent rect. 5 10
251 268.95 radiation 10.0 10 < th dose dependent rect. 24 14
253 268.97 temperature 10.0 90 > th dose dependent rect. 24 19
264 269.05 precipitation 0.1 270 < th dose independent rect. 2 22
265 269.05 precipitation 0.1 270 < th dose dependent rect. 2 22
281 269.12 wind 9.0 270 < th dose dependent rect. 19 2
285 269.22 atmosphere 995.0 90 > th dose independent rect. 5 10
305 269.63 humidity 50.0 270 > th dose independent rect. 3 20
317 269.82 atmosphere 995.0 270 > th dose independent rect. 17 6
327 269.86 atmosphere 1015.0 270 < th dose independent rect. 22 20
337 270.01 precipitation 0.1 270 < th dose independent rect. 23 4
340 270.01 precipitation 0.1 270 < th dose dependent rect. 23 4
349 270.08 temperature 10.0 270 > th dose independent rect. 23 4
350 270.08 temperature 30.0 270 < th dose independent rect. 23 4
351 270.08 humidity 50.0 270 > th dose independent rect. 23 4
354 270.08 atmosphere 995.0 270 > th dose independent rect. 23 4
355 270.08 radiation 1.0 270 < th dose independent rect. 23 4
360 270.08 temperature 10.0 270 > th dose independent rect. 3 20
361 270.08 radiation 1.0 270 < th dose dependent rect. 23 4
367 270.09 humidity 50.0 270 > th dose dependent rect. 19 2
387 270.13 humidity 80.0 270 > th dose independent rect. 24 2
388 270.13 wind 9.0 270 < th dose independent rect. 23 4
389 270.14 precipitation 0.1 270 < th dose independent rect. 22 20
390 270.14 precipitation 0.1 270 < th dose dependent rect. 22 20
413 270.25 radiation 40.0 90 < th dose independent rect. 15 14
416 270.28 atmosphere 995.0 270 > th dose independent rect. 22 20
418 270.29 precipitation 0.1 90 < th dose independent rect. 24 19
419 270.29 precipitation 0.1 90 < th dose dependent rect. 24 19
438 270.46 atmosphere 995.0 90 > th dose independent rect. 24 19
443 270.51 humidity 60.0 30 > th dose dependent rect. 24 5
453 270.61 radiation 40.0 270 < th dose independent rect. 13 14
461 270.70 humidity 50.0 90 > th dose independent rect. 5 19
466 270.75 humidity 80.0 30 > th dose independent rect. 24 5
472 270.79 precipitation 0.1 270 < th dose independent rect. 21 22
473 270.79 wind 9.0 10 < th dose dependent rect. 24 19
474 270.79 precipitation 0.1 270 < th dose dependent rect. 21 22
503 271.03 humidity 50.0 270 > th dose dependent rect. 23 4
505 271.07 atmosphere 1015.0 270 < th dose independent rect. 23 4
528 271.20 precipitation 0.1 270 < th dose independent rect. 18 13
530 271.20 precipitation 0.1 270 < th dose dependent rect. 18 13
544 271.30 radiation 1.0 1440 < th dose dependent rect. 20 5
558 271.60 radiation 10.0 10 < th dose dependent rect. 24 6
570 271.74 precipitation 0.1 270 < th dose independent rect. 24 2
572 271.74 precipitation 0.1 270 < th dose dependent rect. 24 2
589 271.81 wind 9.0 270 < th dose independent rect. 3 20
609 271.84 temperature 10.0 270 > th dose independent rect. 24 2
610 271.84 temperature 30.0 270 < th dose independent rect. 24 2
611 271.84 humidity 50.0 270 > th dose independent rect. 24 2
614 271.84 atmosphere 995.0 270 > th dose independent rect. 24 2
615 271.84 radiation 1.0 270 < th dose independent rect. 24 2
621 271.84 temperature 10.0 270 > th dose independent rect. 2 22
622 271.84 radiation 1.0 270 < th dose dependent rect. 24 2
631 271.86 atmosphere 1015.0 270 < th dose independent rect. 24 2
633 271.87 precipitation 0.1 90 < th dose independent rect. 15 14
636 271.87 precipitation 0.1 90 < th dose dependent rect. 15 14
640 271.89 temperature 10.0 1440 > th dose independent rect. 20 5
643 271.89 temperature 30.0 1440 < th dose independent rect. 20 5
647 271.89 humidity 50.0 1440 > th dose independent rect. 20 5
653 271.89 atmosphere 995.0 1440 > th dose independent rect. 20 5
654 271.89 radiation 1.0 1440 < th dose independent rect. 20 5
674 271.89 temperature 10.0 1440 > th dose independent rect. 1 19
681 271.91 wind 9.0 270 < th dose independent rect. 24 2
689 271.98 precipitation 0.1 90 < th dose independent rect. 5 19
691 271.98 precipitation 0.1 90 < th dose dependent rect. 5 19
713 272.11 radiation 10.0 10 < th dose dependent rect. 21 23
728 272.20 wind 9.0 30 < th dose independent rect. 24 5
730 272.22 temperature 10.0 30 > th dose independent rect. 24 5
731 272.22 temperature 30.0 30 < th dose independent rect. 24 5
732 272.22 humidity 50.0 30 > th dose independent rect. 24 5
735 272.22 atmosphere 995.0 30 > th dose independent rect. 24 5
741 272.22 temperature 10.0 30 > th dose independent rect. 5 19
750 272.27 temperature 15.0 270 > th dose independent rect. 7 11
752 272.28 atmosphere 1015.0 30 < th dose independent rect. 24 5
753 272.29 atmosphere 995.0 90 > th dose independent rect. 15 14
775 272.43 wind 9.0 90 < th dose independent rect. 5 10
779 272.48 wind 9.0 30 < th dose dependent rect. 24 5
795 272.51 humidity 50.0 10 > th dose dependent rect. 19 5
813 272.71 radiation 40.0 30 < th dose dependent rect. 14 15
818 272.74 humidity 50.0 270 > th dose dependent rect. 24 2
820 272.80 atmosphere 995.0 30 > th dose independent rect. 5 19
848 273.00 wind 9.0 270 < th dose dependent rect. 24 2
849 273.01 wind 9.0 270 < th dose dependent rect. 23 4
912 273.27 precipitation 0.1 30 < th dose independent rect. 24 5
914 273.27 precipitation 0.1 30 < th dose dependent rect. 24 5
978 273.54 wind 1.0 10 > th dose independent rect. 19 5
990 273.63 wind 9.0 10 < th dose dependent rect. 19 5
995 273.69 atmosphere 995.0 270 > th dose dependent rect. 18 3