BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0578500 Os03g0578500|Os03g0578500
         (150 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G50360.1  | chr1:18650688-18657106 FORWARD LENGTH=1154          51   2e-07
AT3G19960.2  | chr3:6949787-6956736 FORWARD LENGTH=1177            50   5e-07

>AT1G50360.1 | chr1:18650688-18657106 FORWARD LENGTH=1154
          Length = 1153

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 28/36 (77%)

Query: 84   SGQVGSNMNLDGELRKIKDQFATWKKDYKSRLKETK 119
            SGQV +N+N D ELR++K  F TWKKDY  RL+ETK
Sbjct: 1087 SGQVEANLNPDRELRRLKQMFETWKKDYGGRLRETK 1122



>AT3G19960.2 | chr3:6949787-6956736 FORWARD LENGTH=1177
          Length = 1176

 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 31/45 (68%)

Query: 75   DDEVAATMMSGQVGSNMNLDGELRKIKDQFATWKKDYKSRLKETK 119
            D +    + SGQV +N++ D ELR++K  F TWKKDY  RL+ETK
Sbjct: 1101 DAKFLVEVKSGQVEANLDPDRELRRLKQMFETWKKDYGGRLRETK 1145



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.311    0.127    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,909,658
Number of extensions: 95870
Number of successful extensions: 378
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 379
Number of HSP's successfully gapped: 2
Length of query: 150
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 60
Effective length of database: 8,639,129
Effective search space: 518347740
Effective search space used: 518347740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 107 (45.8 bits)