BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0569000 Os03g0569000|AK064455
         (458 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0569000  Conserved hypothetical protein                      944   0.0  
Os08g0135800  Zinc finger, CCCH-type domain containing protein     73   3e-13

>Os03g0569000 Conserved hypothetical protein
          Length = 458

 Score =  944 bits (2440), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/458 (100%), Positives = 458/458 (100%)

Query: 1   MSSSEAQKCSKGRTERESEEPFKSLSGDNRMKSPQNTIAEKGLMFYQDVPPETNPSEVMQ 60
           MSSSEAQKCSKGRTERESEEPFKSLSGDNRMKSPQNTIAEKGLMFYQDVPPETNPSEVMQ
Sbjct: 1   MSSSEAQKCSKGRTERESEEPFKSLSGDNRMKSPQNTIAEKGLMFYQDVPPETNPSEVMQ 60

Query: 61  QKEQDDLSCCWNGCSDTSTKPVADSHPESSVHQKFSQQGAIEGHSNARSRHELVVGCDIE 120
           QKEQDDLSCCWNGCSDTSTKPVADSHPESSVHQKFSQQGAIEGHSNARSRHELVVGCDIE
Sbjct: 61  QKEQDDLSCCWNGCSDTSTKPVADSHPESSVHQKFSQQGAIEGHSNARSRHELVVGCDIE 120

Query: 121 NTLEADGAKSGEQSTVPELLDKKAAVLCSMDDDSVKVVNVSACSNQDSDTTPCGVTKLDK 180
           NTLEADGAKSGEQSTVPELLDKKAAVLCSMDDDSVKVVNVSACSNQDSDTTPCGVTKLDK
Sbjct: 121 NTLEADGAKSGEQSTVPELLDKKAAVLCSMDDDSVKVVNVSACSNQDSDTTPCGVTKLDK 180

Query: 181 GTANKFLEKPVNLSTGSNFRVIQWGAVDCNIVRIKQENSQHADSEQDTHHKESGEPSQAL 240
           GTANKFLEKPVNLSTGSNFRVIQWGAVDCNIVRIKQENSQHADSEQDTHHKESGEPSQAL
Sbjct: 181 GTANKFLEKPVNLSTGSNFRVIQWGAVDCNIVRIKQENSQHADSEQDTHHKESGEPSQAL 240

Query: 241 KVASNQQIPHQFDSDRDNPCTTRQADWDSCSSIPDLNCLPNMNTDDELEPVENVTFQVNE 300
           KVASNQQIPHQFDSDRDNPCTTRQADWDSCSSIPDLNCLPNMNTDDELEPVENVTFQVNE
Sbjct: 241 KVASNQQIPHQFDSDRDNPCTTRQADWDSCSSIPDLNCLPNMNTDDELEPVENVTFQVNE 300

Query: 301 DGTNPQNNIKSLSASSCKPTLQKEQSKQPEPIELTGGICERKDGNRFQSPNSHSGPSQQS 360
           DGTNPQNNIKSLSASSCKPTLQKEQSKQPEPIELTGGICERKDGNRFQSPNSHSGPSQQS
Sbjct: 301 DGTNPQNNIKSLSASSCKPTLQKEQSKQPEPIELTGGICERKDGNRFQSPNSHSGPSQQS 360

Query: 361 IVEESSMSIDVFKCNLCEFIKNIIKPLWEDGLLSREVHKIIVRKAVEKVTTVLGSKVPLT 420
           IVEESSMSIDVFKCNLCEFIKNIIKPLWEDGLLSREVHKIIVRKAVEKVTTVLGSKVPLT
Sbjct: 361 IVEESSMSIDVFKCNLCEFIKNIIKPLWEDGLLSREVHKIIVRKAVEKVTTVLGSKVPLT 420

Query: 421 EIDACRFLLEESQNLEKLVQGYLDLYVGREVLKKKHDR 458
           EIDACRFLLEESQNLEKLVQGYLDLYVGREVLKKKHDR
Sbjct: 421 EIDACRFLLEESQNLEKLVQGYLDLYVGREVLKKKHDR 458



>Os08g0135800 Zinc finger, CCCH-type domain containing protein
          Length = 958

 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 53/85 (62%), Gaps = 1/85 (1%)

Query: 366 SMSIDVFKCNLCEFIKNIIKPLWEDGLLSREVHKIIVRKAVEKVTTVLGSKVPLTEIDAC 425
           S ++ +FK  L +F+K+ +KP W++G +SREVHK IV+K V+KVTT +    P T+    
Sbjct: 875 SKALKMFKLALADFVKDALKPTWKEGQMSREVHKTIVKKVVDKVTTTV-ENTPQTKEKID 933

Query: 426 RFLLEESQNLEKLVQGYLDLYVGRE 450
            ++    + L KLVQ Y+  Y  ++
Sbjct: 934 IYMSYSREKLNKLVQAYVGKYAKKD 958



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.127    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,104,333
Number of extensions: 686963
Number of successful extensions: 1519
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1518
Number of HSP's successfully gapped: 2
Length of query: 458
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 354
Effective length of database: 11,605,545
Effective search space: 4108362930
Effective search space used: 4108362930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 158 (65.5 bits)