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Os08g0135800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, CCCH-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.3 (0.013) R2 : 0.463
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.624 (0.0316) R2dC : 0.461 R2C : 0.457
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0543 (0.0273) R2dN8 : 0.00599 R2N8 : 0.00213
σ : 0.245
deviance : 27.47
__
_____
C
peak time of C : 10.1
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
15.25 0.183 8.37 0.113 0.63 -1.51 -0.291 7.64 0.0268 10.1 999.8 20 -- --
16.05 0.188 8.28 0.612 0.623 -0.155 -0.313 -- 0.0264 10.1 1000 49 -- --
15.57 0.184 8.37 0.0852 0.631 -1.55 -- 7.9 0.0263 10.1 999.7 19 -- --
16.38 0.19 8.28 0.599 0.626 -0.156 -- -- 0.0264 10.1 1000 3 -- --
39.5 0.294 8.36 0.24 -- -1.14 -- 5.39 0.0269 -- 999.8 11 -- --
16.71 0.192 8.28 0.64 0.625 -- -0.304 -- 0.0161 10.1 -- -- -- --
17.07 0.193 8.28 0.628 0.626 -- -- -- 0.0157 10.1 -- -- -- --
39.9 0.295 8.29 0.588 -- -0.185 -- -- 0.0266 -- 999.7 15 -- --
25.56 0.237 8.29 -- 0.623 -0.256 -- -- -0.0315 10 1000 3 -- --
40.81 0.299 8.3 0.62 -- -- -- -- 0.0146 -- -- -- -- --
27.47 0.245 8.3 -- 0.624 -- -- -- -0.0543 10.1 -- -- -- --
48.74 0.326 8.31 -- -- -0.283 -- -- -0.0303 -- 999.7 10 -- --
50.94 0.333 8.31 -- -- -- -- -- -0.0541 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 13.94 temperature 10.0 720 > th dose dependent rect. 4 3
8 14.35 temperature 30.0 270 < th dose independent rect. 24 13
9 14.36 humidity 70.0 720 > th dose independent rect. 19 5
10 14.38 humidity 60.0 720 > th dose independent rect. 18 15
13 14.41 temperature 20.0 720 > th dose independent rect. 5 2
18 14.45 temperature 30.0 720 < th dose independent rect. 18 6
20 14.49 humidity 50.0 720 > th dose dependent rect. 19 5
31 14.61 temperature 10.0 90 > th dose dependent rect. 5 12
38 14.65 radiation 1.0 720 < th dose independent rect. 9 15
41 14.66 radiation 1.0 720 < th dose independent rect. 14 10
46 14.68 temperature 30.0 720 < th dose independent rect. 18 14
48 14.68 radiation 1.0 720 < th dose dependent rect. 9 15
51 14.69 temperature 30.0 270 < th dose independent rect. 24 17
54 14.69 radiation 1.0 720 < th dose dependent rect. 14 10
55 14.70 temperature 30.0 270 < th dose independent rect. 23 20
71 14.76 radiation 1.0 720 < th dose dependent rect. 17 7
78 14.80 atmosphere 1010.0 720 < th dose independent rect. 17 2
79 14.80 atmosphere 1005.0 270 > th dose independent rect. 24 3
83 14.81 atmosphere 995.0 4320 > th dose independent rect. 3 3
84 14.81 radiation 1.0 720 < th dose independent rect. 17 7
85 14.81 humidity 70.0 720 > th dose independent rect. 19 12
90 14.82 radiation 1.0 720 > th dose independent rect. 8 11
105 14.83 atmosphere 1015.0 720 < th dose independent rect. 7 14
115 14.87 atmosphere 1000.0 90 > th dose independent rect. 17 12
116 14.87 atmosphere 1010.0 90 < th dose independent rect. 17 12
121 14.88 atmosphere 1005.0 10 > th dose independent rect. 17 13
124 14.89 wind 9.0 720 < th dose independent rect. 19 21
127 14.90 temperature 30.0 270 < th dose independent rect. 9 10
130 14.90 radiation 40.0 720 < th dose independent rect. 19 14
134 14.91 temperature 30.0 30 < th dose independent rect. 11 10
137 14.91 humidity 50.0 270 > th dose independent rect. 4 11
154 14.93 wind 1.0 720 > th dose independent rect. 7 5
155 14.93 temperature 30.0 720 < th dose independent rect. 7 5
157 14.93 radiation 30.0 270 < th dose independent rect. 15 13
163 14.94 temperature 15.0 10 > th dose dependent rect. 6 12
168 14.95 radiation 20.0 720 < th dose independent rect. 21 10
170 14.95 atmosphere 1005.0 10 > th dose independent rect. 15 15
171 14.95 wind 9.0 720 < th dose independent rect. 12 19
173 14.96 temperature 15.0 720 > th dose independent rect. 16 3
174 14.96 wind 9.0 720 < th dose independent rect. 21 10
176 14.96 wind 9.0 720 < th dose independent rect. 4 12
178 14.96 wind 9.0 720 < th dose independent rect. 19 14
181 14.97 atmosphere 1005.0 10 > th dose independent rect. 24 6
187 14.98 atmosphere 1000.0 720 > th dose independent rect. 17 2
192 14.98 wind 9.0 270 < th dose independent rect. 12 12
193 14.98 temperature 15.0 90 > th dose independent rect. 17 12
211 14.99 temperature 10.0 720 > th dose independent rect. 21 10
212 14.99 temperature 30.0 720 < th dose independent rect. 21 10
213 14.99 humidity 50.0 720 > th dose independent rect. 21 10
215 14.99 atmosphere 995.0 720 > th dose independent rect. 21 10
221 14.99 temperature 10.0 720 > th dose independent rect. 7 14
224 14.99 precipitation 0.1 720 < th dose independent rect. 24 19
242 14.99 precipitation 0.1 720 < th dose dependent rect. 24 19
244 15.00 atmosphere 1005.0 90 > th dose independent rect. 2 3
246 15.00 temperature 10.0 720 > th dose independent rect. 9 10
247 15.00 atmosphere 1015.0 720 < th dose independent rect. 9 10
250 15.00 temperature 10.0 720 > th dose independent rect. 19 14
252 15.00 atmosphere 995.0 720 > th dose independent rect. 19 14
261 15.01 humidity 80.0 720 > th dose independent rect. 5 2
267 15.01 temperature 30.0 90 < th dose independent rect. 2 13
268 15.01 atmosphere 995.0 270 > th dose independent rect. 15 13
286 15.02 temperature 10.0 90 > th dose dependent rect. 5 21
287 15.02 temperature 25.0 10 > th dose dependent rect. 21 21
295 15.03 precipitation 0.1 720 < th dose independent rect. 16 12
301 15.03 precipitation 0.1 720 < th dose dependent rect. 16 12
318 15.05 radiation 20.0 720 < th dose independent rect. 4 3
320 15.05 wind 9.0 720 < th dose independent rect. 19 5
330 15.05 temperature 30.0 90 < th dose independent rect. 2 19
337 15.06 precipitation 0.1 720 < th dose independent rect. 7 5
344 15.06 humidity 50.0 720 > th dose independent rect. 12 19
345 15.06 wind 9.0 720 < th dose independent rect. 4 20
346 15.06 precipitation 0.1 720 < th dose dependent rect. 7 5
351 15.07 wind 7.0 720 < th dose independent rect. 4 3
353 15.07 radiation 1.0 720 > th dose independent rect. 7 5
361 15.07 temperature 30.0 720 > th dose dependent rect. 18 1
375 15.07 radiation 20.0 90 < th dose dependent rect. 17 12
386 15.08 radiation 40.0 720 < th dose independent rect. 16 3
387 15.08 temperature 10.0 720 > th dose independent rect. 19 5
390 15.08 atmosphere 995.0 4320 > th dose independent rect. 1 5
391 15.08 atmosphere 995.0 720 > th dose independent rect. 19 5
400 15.08 radiation 10.0 90 < th dose independent rect. 17 12
401 15.08 precipitation 0.1 90 < th dose independent rect. 5 12
406 15.08 temperature 10.0 720 > th dose independent rect. 24 19
407 15.08 temperature 10.0 720 > th dose independent rect. 19 21
415 15.08 precipitation 0.1 90 < th dose dependent rect. 5 12
422 15.09 temperature 10.0 720 > th dose independent rect. 4 3
423 15.09 temperature 30.0 720 < th dose independent rect. 4 3
424 15.09 humidity 50.0 720 > th dose independent rect. 4 3
427 15.09 atmosphere 995.0 720 > th dose independent rect. 4 3
428 15.09 atmosphere 1015.0 720 < th dose independent rect. 4 3
432 15.09 wind 9.0 720 < th dose independent rect. 12 4
434 15.09 temperature 10.0 720 > th dose independent rect. 7 5
435 15.09 atmosphere 995.0 720 > th dose independent rect. 7 5
436 15.09 atmosphere 1015.0 720 < th dose independent rect. 7 5
439 15.09 atmosphere 1015.0 720 < th dose independent rect. 16 12
443 15.09 temperature 10.0 720 > th dose independent rect. 12 19
444 15.09 temperature 10.0 720 > th dose independent rect. 7 21
445 15.09 temperature 10.0 720 > th dose dependent rect. 17 2
450 15.10 wind 1.0 720 > th dose independent rect. 16 3
455 15.10 temperature 10.0 270 > th dose independent rect. 4 11
456 15.10 atmosphere 1015.0 270 < th dose independent rect. 4 11
460 15.10 humidity 50.0 90 > th dose independent rect. 17 12
465 15.10 temperature 10.0 270 > th dose independent rect. 15 13
474 15.11 atmosphere 1005.0 10 > th dose independent rect. 2 4
476 15.11 atmosphere 995.0 270 > th dose independent rect. 8 11
478 15.11 temperature 20.0 720 > th dose independent rect. 4 12
479 15.11 temperature 15.0 270 > th dose independent rect. 24 12
484 15.11 wind 9.0 720 < th dose dependent rect. 5 2
490 15.11 temperature 10.0 90 > th dose dependent rect. 5 19
502 15.12 temperature 25.0 90 < th dose independent rect. 2 3
504 15.12 radiation 40.0 720 < th dose independent rect. 4 5
519 15.12 temperature 30.0 720 < th dose dependent rect. 1 3
520 15.12 wind 9.0 720 < th dose dependent rect. 4 5
561 15.14 precipitation 0.1 720 < th dose independent rect. 5 2
565 15.14 precipitation 0.1 720 < th dose independent rect. 16 3
571 15.14 precipitation 0.1 720 < th dose independent rect. 9 10
573 15.14 precipitation 0.1 270 < th dose independent rect. 24 12
577 15.14 precipitation 0.1 720 < th dose independent rect. 7 21
578 15.14 precipitation 0.1 720 < th dose dependent rect. 5 2
582 15.14 precipitation 0.1 720 < th dose dependent rect. 16 3
584 15.14 precipitation 0.1 720 < th dose dependent rect. 9 10
590 15.14 precipitation 0.1 270 < th dose dependent rect. 24 12
594 15.14 precipitation 0.1 720 < th dose dependent rect. 7 21
598 15.15 precipitation 0.1 720 < th dose independent rect. 24 4
603 15.15 wind 9.0 90 < th dose independent rect. 17 12
606 15.15 atmosphere 1015.0 270 < th dose independent rect. 24 12
610 15.15 atmosphere 995.0 720 > th dose independent rect. 24 19
612 15.15 radiation 1.0 720 < th dose independent rect. 4 20
616 15.15 temperature 10.0 720 > th dose dependent rect. 16 4
617 15.15 precipitation 0.1 720 < th dose dependent rect. 24 4
623 15.16 atmosphere 1000.0 10 > th dose independent sin 1 NA
628 15.16 wind 1.0 720 > th dose independent rect. 16 5
631 15.16 temperature 10.0 270 > th dose independent rect. 12 12
634 15.16 atmosphere 995.0 270 > th dose independent rect. 24 12
662 15.17 atmosphere 1000.0 720 > th dose independent rect. 22 14
669 15.17 radiation 10.0 720 < th dose dependent rect. 4 20
677 15.18 wind 9.0 720 < th dose independent rect. 7 5
684 15.18 wind 1.0 270 > th dose independent rect. 8 11
687 15.18 wind 9.0 270 < th dose independent rect. 24 12
696 15.18 humidity 60.0 720 < th dose independent rect. 18 15
697 15.18 atmosphere 1015.0 720 < th dose independent rect. 8 20
717 15.19 precipitation 0.1 720 < th dose independent rect. 7 14
721 15.19 humidity 50.0 720 > th dose dependent rect. 5 2
727 15.19 precipitation 0.1 720 < th dose dependent rect. 7 14
730 15.20 atmosphere 1000.0 90 > th dose independent sin 2 NA
731 15.20 humidity 80.0 720 > th dose independent rect. 21 1
732 15.20 humidity 50.0 1440 < th dose independent rect. 16 1
743 15.20 temperature 10.0 720 > th dose independent rect. 17 10
744 15.20 radiation 30.0 720 < th dose independent rect. 17 10
746 15.20 atmosphere 995.0 270 > th dose independent rect. 4 11
754 15.20 temperature 10.0 720 > th dose independent rect. 3 14
760 15.20 atmosphere 995.0 720 > th dose independent rect. 16 20
762 15.20 humidity 50.0 1440 < th dose dependent rect. 16 1
774 15.21 wind 9.0 720 < th dose independent rect. 17 2
778 15.21 temperature 10.0 720 > th dose independent rect. 12 4
784 15.21 atmosphere 1015.0 720 < th dose independent rect. 12 4
797 15.21 temperature 10.0 1440 > th dose independent rect. 18 12
800 15.21 humidity 50.0 720 > th dose independent rect. 12 12
801 15.21 humidity 50.0 1440 > th dose independent rect. 18 12
803 15.21 radiation 20.0 1440 < th dose independent rect. 18 12
824 15.21 temperature 10.0 720 > th dose independent rect. 16 20
825 15.21 precipitation 0.1 720 < th dose independent rect. 16 20
826 15.21 radiation 40.0 1440 < th dose dependent rect. 3 2
829 15.21 radiation 1.0 720 < th dose dependent rect. 23 7
839 15.21 humidity 60.0 720 < th dose dependent rect. 18 15
842 15.21 precipitation 0.1 720 < th dose dependent rect. 16 20
845 15.22 temperature 25.0 4320 < th dose independent rect. 1 1
848 15.22 wind 9.0 720 < th dose independent rect. 24 4
849 15.22 temperature 10.0 720 > th dose independent rect. 24 4
850 15.22 temperature 30.0 720 < th dose independent rect. 24 4
851 15.22 humidity 50.0 720 > th dose independent rect. 24 4
855 15.22 atmosphere 1015.0 720 < th dose independent rect. 24 4
857 15.22 radiation 1.0 720 < th dose independent rect. 24 4
862 15.22 atmosphere 1015.0 720 < th dose independent rect. 23 6
884 15.22 temperature 10.0 720 > th dose independent rect. 4 20
885 15.22 temperature 25.0 30 > th dose dependent sin 1 NA
889 15.22 humidity 90.0 90 > th dose dependent rect. 2 3
890 15.22 radiation 1.0 720 < th dose dependent rect. 24 4
917 15.23 wind 9.0 270 < th dose independent rect. 15 13
927 15.23 atmosphere 1000.0 270 > th dose independent rect. 22 23
939 15.24 radiation 10.0 720 > th dose independent rect. 11 1
945 15.24 precipitation 0.1 720 < th dose independent rect. 19 5
966 15.24 atmosphere 1015.0 720 < th dose independent rect. 16 20
976 15.24 precipitation 0.1 720 < th dose dependent rect. 19 5
986 15.24 radiation 40.0 720 < th dose dependent rect. 21 10
989 15.25 humidity 60.0 720 < th dose independent rect. 18 1
990 15.25 wind 1.0 14400 < th dose independent rect. 1 2
994 15.25 radiation 20.0 4320 < th dose independent rect. 3 3
997 15.25 precipitation 0.1 720 < th dose independent rect. 12 4