BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0135800 Os08g0135800|AK100455
         (958 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G18640.1  | chr3:6413617-6415829 REVERSE LENGTH=677             84   5e-16
AT3G26850.1  | chr3:9896541-9897415 REVERSE LENGTH=266             75   2e-13
AT2G33835.1  | chr2:14312145-14314566 REVERSE LENGTH=588           57   6e-08
AT3G47120.1  | chr3:17351334-17352769 REVERSE LENGTH=353           50   8e-06

>AT3G18640.1 | chr3:6413617-6415829 REVERSE LENGTH=677
          Length = 676

 Score = 83.6 bits (205), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 55/90 (61%), Gaps = 2/90 (2%)

Query: 869 NKKSKDSKALKMFKLALADFVKDALKPTWKEGQMSREXXXXXXXXXXXXXXXXXE--NTP 926
           NKK KD K ++ FK AL + VK+ LKP WKEG+++++                 +  N P
Sbjct: 586 NKKEKDPKGMRAFKFALVEVVKELLKPAWKEGKLNKDGYKNIVKKVAEKVTGTMQSGNVP 645

Query: 927 QTKEKIDIYMSYSREKLNKLVQAYVGKYAK 956
           QT+EKID Y+S S+ KL KLVQAYVGK  K
Sbjct: 646 QTQEKIDHYLSASKPKLTKLVQAYVGKIKK 675



>AT3G26850.1 | chr3:9896541-9897415 REVERSE LENGTH=266
          Length = 265

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 62/115 (53%), Gaps = 4/115 (3%)

Query: 844 NETTPAENKKEEPKDTDAEANEDGENKKSKDSKALKMFKLALADFVKDALKPTWKEGQMS 903
           NE    EN   E  +T  ++ E  + + S  S+++K+FK+ L  FVKD LKP+W++G MS
Sbjct: 152 NENPKVENNVHEGDNTRKKSREKSKERDS--SRSMKLFKVVLTKFVKDLLKPSWRQGNMS 209

Query: 904 REXXXXXXXXXXXXXXXXXE--NTPQTKEKIDIYMSYSREKLNKLVQAYVGKYAK 956
           +E                 E    P+++ KID Y+  S++KL KLV  YV KY K
Sbjct: 210 KEAFKTIVKRVVDKVSNSMEGRRIPKSRAKIDKYIDSSQQKLTKLVMGYVDKYVK 264



>AT2G33835.1 | chr2:14312145-14314566 REVERSE LENGTH=588
          Length = 587

 Score = 56.6 bits (135), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 3/103 (2%)

Query: 857 KDTDAEANEDGENKKSKDSKALKMFKLALADFVKDALKPTWKEGQMSREX---XXXXXXX 913
           K T      DGE +     K +++F+ A+ + +K+ LKP W+EG+++++           
Sbjct: 484 KKTKKSDEIDGEVRSDAGMKVMRLFRTAVVETIKEMLKPLWREGRLTKDVHNMIVKKAAE 543

Query: 914 XXXXXXXXXENTPQTKEKIDIYMSYSREKLNKLVQAYVGKYAK 956
                       P   E +D Y+  S  ++ KLV+ YV KY K
Sbjct: 544 KVVGAAVQFHQVPTDTESVDQYLGLSGTRIVKLVEGYVEKYGK 586



>AT3G47120.1 | chr3:17351334-17352769 REVERSE LENGTH=353
          Length = 352

 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 16/115 (13%)

Query: 298 GHYDEGTWERSEPRREYRSTM-PCHDFVKGRCSRGANCRYVHDDS-TPHGGWRDEVRDNA 355
           G Y +   E  E RR+ R     C  F +G C+RG +C++ HD+    + GW        
Sbjct: 113 GAYKKHEEEDEETRRQNREARGVCRAFQRGECTRGDSCKFSHDEKRAANTGW-------- 164

Query: 356 IGRSGPDSSYGNRTEH--RRTNKNPCKFFANGGCRRGQNCPYLHEEASQSQMGLG 408
               G +    ++ +H   R  +  C+ F  G C RG +C + H+E   +  G G
Sbjct: 165 ----GHEEDRSSKWDHDKNREGRGVCRAFQRGECTRGDSCKFSHDEKRAATTGWG 215



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.310    0.128    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 21,394,815
Number of extensions: 966113
Number of successful extensions: 2601
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2595
Number of HSP's successfully gapped: 4
Length of query: 958
Length of database: 11,106,569
Length adjustment: 108
Effective length of query: 850
Effective length of database: 8,145,641
Effective search space: 6923794850
Effective search space used: 6923794850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 117 (49.7 bits)