BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0135800 Os08g0135800|AK100455
(958 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0135800 Zinc finger, CCCH-type domain containing protein 1793 0.0
Os03g0214900 Conserved hypothetical protein 84 4e-16
>Os08g0135800 Zinc finger, CCCH-type domain containing protein
Length = 958
Score = 1793 bits (4645), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 874/958 (91%), Positives = 874/958 (91%)
Query: 1 MTGETRKERSKWDTKGPPDIVEISEDESLPMNMDDHKKGNDDHRKGSDLLPSQDFGHGND 60
MTGETRKERSKWDTKGPPDIVEISEDESLPMNMDDHKKGNDDHRKGSDLLPSQDFGHGND
Sbjct: 1 MTGETRKERSKWDTKGPPDIVEISEDESLPMNMDDHKKGNDDHRKGSDLLPSQDFGHGND 60
Query: 61 KQIGESLNLKSTVSMHHGSAGHEQDRADGLNKDIKERSSKASSERLPLRMGDEDHNKNDW 120
KQIGESLNLKSTVSMHHGSAGHEQDRADGLNKDIKERSSKASSERLPLRMGDEDHNKNDW
Sbjct: 61 KQIGESLNLKSTVSMHHGSAGHEQDRADGLNKDIKERSSKASSERLPLRMGDEDHNKNDW 120
Query: 121 HNRGFEKAAGNQGMSRYADDRRRGDGWGTTLXXXXXXXXXXXXPDAWKRSRSPLSPXXXX 180
HNRGFEKAAGNQGMSRYADDRRRGDGWGTTL PDAWKRSRSPLSP
Sbjct: 121 HNRGFEKAAGNQGMSRYADDRRRGDGWGTTLSRGYSSRISSSGPDAWKRSRSPLSPRGGW 180
Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPYFSDRGSEWRVERSRSSGGPALPCRDFVA 240
PYFSDRGSEWRVERSRSSGGPALPCRDFVA
Sbjct: 181 NRSRRNRSRSRSRSRSIGRGRGRSRSRSRSPYFSDRGSEWRVERSRSSGGPALPCRDFVA 240
Query: 241 GRCRRGSNCRFPHEDGVRRQFDEHYPVDSREKYGHQNRDFMDPREQDDYLRNRPPRGGHY 300
GRCRRGSNCRFPHEDGVRRQFDEHYPVDSREKYGHQNRDFMDPREQDDYLRNRPPRGGHY
Sbjct: 241 GRCRRGSNCRFPHEDGVRRQFDEHYPVDSREKYGHQNRDFMDPREQDDYLRNRPPRGGHY 300
Query: 301 DEGTWERSEPRREYRSTMPCHDFVKGRCSRGANCRYVHDDSTPHGGWRDEVRDNAIGRSG 360
DEGTWERSEPRREYRSTMPCHDFVKGRCSRGANCRYVHDDSTPHGGWRDEVRDNAIGRSG
Sbjct: 301 DEGTWERSEPRREYRSTMPCHDFVKGRCSRGANCRYVHDDSTPHGGWRDEVRDNAIGRSG 360
Query: 361 PDSSYGNRTEHRRTNKNPCKFFANGGCRRGQNCPYLHEEASQSQMGLGAPDEPGYTGGPT 420
PDSSYGNRTEHRRTNKNPCKFFANGGCRRGQNCPYLHEEASQSQMGLGAPDEPGYTGGPT
Sbjct: 361 PDSSYGNRTEHRRTNKNPCKFFANGGCRRGQNCPYLHEEASQSQMGLGAPDEPGYTGGPT 420
Query: 421 TRGDYLSWSEQNNSVQASSHVLSRDDRENPVPQGTGRNDSRYENKNRHSKDAGSSQYQIF 480
TRGDYLSWSEQNNSVQASSHVLSRDDRENPVPQGTGRNDSRYENKNRHSKDAGSSQYQIF
Sbjct: 421 TRGDYLSWSEQNNSVQASSHVLSRDDRENPVPQGTGRNDSRYENKNRHSKDAGSSQYQIF 480
Query: 481 PQDDFGSVGQNKPEIAASQLPQFIPSVQTGTESINIDKVSDMGGQSGPGTVGNLSMQIGM 540
PQDDFGSVGQNKPEIAASQLPQFIPSVQTGTESINIDKVSDMGGQSGPGTVGNLSMQIGM
Sbjct: 481 PQDDFGSVGQNKPEIAASQLPQFIPSVQTGTESINIDKVSDMGGQSGPGTVGNLSMQIGM 540
Query: 541 HSANLLGGHNLGQKAESQDAISQISAAPSLPGATQLQNTTSSVPLNSQVQQSDFSLHPNR 600
HSANLLGGHNLGQKAESQDAISQISAAPSLPGATQLQNTTSSVPLNSQVQQSDFSLHPNR
Sbjct: 541 HSANLLGGHNLGQKAESQDAISQISAAPSLPGATQLQNTTSSVPLNSQVQQSDFSLHPNR 600
Query: 601 QDQFAVPHATTNNSAPSMQSQPVAPYMGHSQHGYIMGAQSLPDLSVHNGQIFNVGQVPQN 660
QDQFAVPHATTNNSAPSMQSQPVAPYMGHSQHGYIMGAQSLPDLSVHNGQIFNVGQVPQN
Sbjct: 601 QDQFAVPHATTNNSAPSMQSQPVAPYMGHSQHGYIMGAQSLPDLSVHNGQIFNVGQVPQN 660
Query: 661 LPTIVHAGQNQATSDTPNLGRDSGDQGLQNTHNFQPVAPNEQTQSQTLQGLXXXXXXXXX 720
LPTIVHAGQNQATSDTPNLGRDSGDQGLQNTHNFQPVAPNEQTQSQTLQGL
Sbjct: 661 LPTIVHAGQNQATSDTPNLGRDSGDQGLQNTHNFQPVAPNEQTQSQTLQGLSVVASSSSV 720
Query: 721 DMAGAPLSHNAVSSQEEVRRVTASLAQYFVPSLTADTSGLQSSQPDPNSSLMNNSSAAPQ 780
DMAGAPLSHNAVSSQEEVRRVTASLAQYFVPSLTADTSGLQSSQPDPNSSLMNNSSAAPQ
Sbjct: 721 DMAGAPLSHNAVSSQEEVRRVTASLAQYFVPSLTADTSGLQSSQPDPNSSLMNNSSAAPQ 780
Query: 781 AVQPNHWPWLQQAGMVQPSHIVPPEQPAPQTFQAPMAAGSSNGNPLLLPHSXXXXXXXXX 840
AVQPNHWPWLQQAGMVQPSHIVPPEQPAPQTFQAPMAAGSSNGNPLLLPHS
Sbjct: 781 AVQPNHWPWLQQAGMVQPSHIVPPEQPAPQTFQAPMAAGSSNGNPLLLPHSVAPTVPAAA 840
Query: 841 XXXNETTPAENKKEEPKDTDAEANEDGENKKSKDSKALKMFKLALADFVKDALKPTWKEG 900
NETTPAENKKEEPKDTDAEANEDGENKKSKDSKALKMFKLALADFVKDALKPTWKEG
Sbjct: 841 LATNETTPAENKKEEPKDTDAEANEDGENKKSKDSKALKMFKLALADFVKDALKPTWKEG 900
Query: 901 QMSREXXXXXXXXXXXXXXXXXENTPQTKEKIDIYMSYSREKLNKLVQAYVGKYAKKD 958
QMSRE ENTPQTKEKIDIYMSYSREKLNKLVQAYVGKYAKKD
Sbjct: 901 QMSREVHKTIVKKVVDKVTTTVENTPQTKEKIDIYMSYSREKLNKLVQAYVGKYAKKD 958
>Os03g0214900 Conserved hypothetical protein
Length = 979
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 63/103 (61%), Gaps = 3/103 (2%)
Query: 856 PKDTDAEANEDGENKKSKDSKALKMFKLALADFVKDALKPTWKEGQMSREXXXXXXXXXX 915
P D D + + D +NK++KDS+++K+FK+A+ADFVK+ LKP+W++G +SRE
Sbjct: 877 PGDIDNDESVD-KNKRTKDSRSMKLFKVAIADFVKEVLKPSWRQGNISREAFKTIVKKTV 935
Query: 916 XXXXXXXEN--TPQTKEKIDIYMSYSREKLNKLVQAYVGKYAK 956
N P+T KI Y+ S++K+ KLV YV KY K
Sbjct: 936 DKVSSSVPNNHIPKTPAKIKQYVQSSQKKVTKLVMGYVDKYVK 978
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.310 0.128 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 34,910,276
Number of extensions: 1633284
Number of successful extensions: 4152
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 4142
Number of HSP's successfully gapped: 2
Length of query: 958
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 848
Effective length of database: 11,292,261
Effective search space: 9575837328
Effective search space used: 9575837328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 161 (66.6 bits)