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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0569000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.96 (0.0544) R2 : 0.733
β1 : 8.25 (0.291) R2dD : 1.16 R2D : 0.166
β2 : 1.2 (0.133) R2dC : 0.0505 R2C : 0.00853
β3 : -2.13 (0.199) R2dE : 0.0867 R2E : 0.0565
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -11.3 (0.788) R2dD*E : 0.328 R2D*E : -0.757
γ1 : 1.62 (0.123) R2dN8 : 0.164 R2N8 : -0.00162
σ : 0.967
deviance : 431.36
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_____
C
peak time of C : 7.53
E
wheather : radiation
threshold : 0.8118
memory length : 13054
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 9.29
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
416.97 0.959 4.96 8.32 1.28 -1.97 2.48 -11 1.62 7.51 0.8179 13008 8.57 --
549.89 1.09 5.11 6.63 1.62 -2.22 3.21 -- 1.61 7.42 5.1 10076 9.71 --
431.36 0.967 4.96 8.25 1.2 -2.13 -- -11.3 1.62 7.53 0.8118 13054 9.29 --
533.84 1.08 5.11 6.54 1.88 -3.02 -- -- 1.41 7.35 8.68 11177 11.4 --
508.72 1.05 4.96 8.34 -- -2.57 -- -12.1 1.51 -- 0.8198 13094 10.3 --
656.63 1.2 5.08 5.33 1.37 -- 3.04 -- 1.41 7.5 -- -- -- --
682.04 1.22 5.09 5.4 1.38 -- -- -- 1.4 7.39 -- -- -- --
595.44 1.14 5.16 6.46 -- -3.27 -- -- 1.13 -- 7.819 11831 12.6 --
1165.98 1.59 5.49 -- 2.18 -3 -- -- -0.196 7.88 20.03 1378 12.2 --
783.65 1.31 5.12 5.42 -- -- -- -- 1.43 -- -- -- -- --
1450.76 1.78 5.22 -- 1.43 -- -- -- 0.802 7.14 -- -- -- --
1201.53 1.61 5.4 -- -- -3.28 -- -- 0.141 -- 20 1649 13.1 --
1559.44 1.84 5.25 -- -- -- -- -- 0.824 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 407.09 radiation 1.0 14400 < th dose dependent rect. 18 1
3 407.27 radiation 1.0 14400 < th dose dependent rect. 18 5
36 419.03 radiation 1.0 14400 < th dose dependent sin 14 NA
39 419.42 radiation 1.0 43200 < th dose dependent rect. 4 1
48 420.50 radiation 1.0 43200 < th dose independent rect. 18 5
50 420.58 radiation 1.0 43200 < th dose independent rect. 18 1
52 420.58 radiation 1.0 43200 < th dose independent rect. 18 9
53 420.59 radiation 1.0 43200 < th dose independent rect. 18 3
89 422.86 radiation 1.0 43200 > th dose independent rect. 18 1
100 422.86 radiation 1.0 14400 < th dose dependent rect. 13 17
149 424.12 radiation 1.0 14400 < th dose dependent rect. 17 21
224 427.75 temperature 25.0 14400 > th dose dependent rect. 4 2
284 429.34 radiation 1.0 43200 < th dose dependent rect. 21 8
285 429.40 radiation 1.0 14400 < th dose dependent rect. 4 15
286 429.40 radiation 1.0 14400 < th dose dependent rect. 2 17
288 429.42 radiation 1.0 14400 < th dose dependent rect. 4 19
290 429.43 radiation 1.0 14400 < th dose dependent rect. 2 21
331 429.98 radiation 1.0 14400 < th dose independent rect. 16 15
335 430.03 radiation 1.0 14400 < th dose dependent rect. 22 21
343 430.11 radiation 1.0 14400 < th dose dependent no NA NA
362 430.21 radiation 1.0 14400 < th dose independent sin 14 NA
367 430.39 radiation 10.0 14400 < th dose dependent rect. 9 1
373 431.15 radiation 1.0 14400 < th dose independent rect. 17 21
375 431.22 radiation 1.0 14400 < th dose independent rect. 8 23
410 432.17 radiation 1.0 14400 > th dose independent sin 14 NA
418 432.44 radiation 1.0 14400 > th dose independent rect. 8 23
419 432.45 radiation 1.0 14400 > th dose independent rect. 16 15
424 432.83 radiation 1.0 14400 > th dose independent rect. 16 22
428 433.04 radiation 1.0 14400 > th dose independent rect. 16 18
429 433.10 temperature 20.0 1440 > th dose dependent rect. 6 1
479 433.89 radiation 1.0 14400 < th dose independent rect. 5 19
482 433.90 radiation 1.0 14400 < th dose independent rect. 5 22
484 433.91 radiation 1.0 14400 < th dose independent rect. 5 14
488 433.92 radiation 1.0 14400 < th dose independent rect. 5 16
498 434.00 radiation 1.0 14400 < th dose independent rect. 13 12
506 434.03 radiation 1.0 14400 < th dose independent rect. 13 6
518 434.18 radiation 1.0 14400 < th dose independent rect. 2 21
519 434.18 radiation 1.0 14400 < th dose independent rect. 22 21
532 434.20 radiation 1.0 14400 < th dose independent no NA NA
568 434.27 radiation 1.0 14400 < th dose independent rect. 11 14
580 434.30 radiation 1.0 14400 < th dose independent rect. 11 8
613 434.61 radiation 1.0 14400 > th dose independent rect. 10 9
636 434.71 radiation 1.0 14400 > th dose independent rect. 13 6
689 434.88 radiation 1.0 14400 > th dose independent rect. 5 14
703 434.92 radiation 1.0 14400 > th dose independent rect. 13 21
728 435.16 radiation 1.0 14400 > th dose independent no NA NA
877 437.35 precipitation 0.1 43200 > th dose dependent rect. 20 6
901 437.84 temperature 20.0 1440 > th dose dependent rect. 5 3
906 437.95 temperature 25.0 1440 > th dose dependent rect. 17 6
966 439.12 temperature 25.0 14400 > th dose independent rect. 4 1
992 439.57 temperature 25.0 1440 > th dose dependent rect. 18 2