BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0569000 Os03g0569000|AK064455
         (458 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G26850.1  | chr3:9896541-9897415 REVERSE LENGTH=266             72   7e-13
AT2G33835.1  | chr2:14312145-14314566 REVERSE LENGTH=588           61   1e-09
AT3G18640.1  | chr3:6413617-6415829 REVERSE LENGTH=677             58   8e-09

>AT3G26850.1 | chr3:9896541-9897415 REVERSE LENGTH=266
          Length = 265

 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 62/106 (58%), Gaps = 1/106 (0%)

Query: 343 DGNRFQSPNSHSGPSQQSIVEESSMSIDVFKCNLCEFIKNIIKPLWEDGLLSREVHKIIV 402
           + N  +  N+     ++S   +SS S+ +FK  L +F+K+++KP W  G +S+E  K IV
Sbjct: 158 ENNVHEGDNTRKKSREKSKERDSSRSMKLFKVVLTKFVKDLLKPSWRQGNMSKEAFKTIV 217

Query: 403 RKAVEKVTTVL-GSKVPLTEIDACRFLLEESQNLEKLVQGYLDLYV 447
           ++ V+KV+  + G ++P +     +++    Q L KLV GY+D YV
Sbjct: 218 KRVVDKVSNSMEGRRIPKSRAKIDKYIDSSQQKLTKLVMGYVDKYV 263



>AT2G33835.1 | chr2:14312145-14314566 REVERSE LENGTH=588
          Length = 587

 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 2/80 (2%)

Query: 369 IDVFKCNLCEFIKNIIKPLWEDGLLSREVHKIIVRKAVEKV--TTVLGSKVPLTEIDACR 426
           + +F+  + E IK ++KPLW +G L+++VH +IV+KA EKV    V   +VP       +
Sbjct: 505 MRLFRTAVVETIKEMLKPLWREGRLTKDVHNMIVKKAAEKVVGAAVQFHQVPTDTESVDQ 564

Query: 427 FLLEESQNLEKLVQGYLDLY 446
           +L      + KLV+GY++ Y
Sbjct: 565 YLGLSGTRIVKLVEGYVEKY 584



>AT3G18640.1 | chr3:6413617-6415829 REVERSE LENGTH=677
          Length = 676

 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 363 EESSMSIDVFKCNLCEFIKNIIKPLWEDGLLSREVHKIIVRKAVEKVT-TVLGSKVPLTE 421
           E+    +  FK  L E +K ++KP W++G L+++ +K IV+K  EKVT T+    VP T+
Sbjct: 589 EKDPKGMRAFKFALVEVVKELLKPAWKEGKLNKDGYKNIVKKVAEKVTGTMQSGNVPQTQ 648

Query: 422 IDACRFLLEESQNLEKLVQGYL 443
                +L      L KLVQ Y+
Sbjct: 649 EKIDHYLSASKPKLTKLVQAYV 670



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.310    0.127    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,716,340
Number of extensions: 478824
Number of successful extensions: 1132
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1130
Number of HSP's successfully gapped: 3
Length of query: 458
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 356
Effective length of database: 8,310,137
Effective search space: 2958408772
Effective search space used: 2958408772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 113 (48.1 bits)