BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0562200 Os03g0562200|AK072991
         (305 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0562200  Cyclin-like F-box domain containing protein         581   e-166
Os10g0502900  Cyclin-like F-box domain containing protein          75   7e-14

>Os03g0562200 Cyclin-like F-box domain containing protein
          Length = 305

 Score =  581 bits (1498), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 286/305 (93%), Positives = 286/305 (93%)

Query: 1   MASSSPPVRPWADLQHDLLVMIMSRVGLPDLLSGGATRACSAWRASARDPLVWRRVDLRD 60
           MASSSPPVRPWADLQHDLLVMIMSRVGLPDLLSGGATRACSAWRASARDPLVWRRVDLRD
Sbjct: 1   MASSSPPVRPWADLQHDLLVMIMSRVGLPDLLSGGATRACSAWRASARDPLVWRRVDLRD 60

Query: 61  WAVLTSXXXXXXXXXXXXXXXXXXXVPLQAALCSVLEIVVRRAAGRMEALLLPEFADEEH 120
           WAVLTS                   VPLQAALCSVLEIVVRRAAGRMEALLLPEFADEEH
Sbjct: 61  WAVLTSARRRLAAGDGEAAAAGRGRVPLQAALCSVLEIVVRRAAGRMEALLLPEFADEEH 120

Query: 121 LLFLAQRNPNLHYFSLPATCITYDQFRKAIDKLQFLKGMAVDEGLINHDVLSHVHQCCPD 180
           LLFLAQRNPNLHYFSLPATCITYDQFRKAIDKLQFLKGMAVDEGLINHDVLSHVHQCCPD
Sbjct: 121 LLFLAQRNPNLHYFSLPATCITYDQFRKAIDKLQFLKGMAVDEGLINHDVLSHVHQCCPD 180

Query: 181 FLELKVFALYVDEEMASIICNSLPRLKKLEIPNSDMSCAAIIKFLDCLEELEYLDISGYE 240
           FLELKVFALYVDEEMASIICNSLPRLKKLEIPNSDMSCAAIIKFLDCLEELEYLDISGYE
Sbjct: 181 FLELKVFALYVDEEMASIICNSLPRLKKLEIPNSDMSCAAIIKFLDCLEELEYLDISGYE 240

Query: 241 TSAISSAVLQKASRLNIFIWNSKFELGEFTDCSNCGEHCINPQEPCKCVMEHRVMDWLAG 300
           TSAISSAVLQKASRLNIFIWNSKFELGEFTDCSNCGEHCINPQEPCKCVMEHRVMDWLAG
Sbjct: 241 TSAISSAVLQKASRLNIFIWNSKFELGEFTDCSNCGEHCINPQEPCKCVMEHRVMDWLAG 300

Query: 301 PSQPS 305
           PSQPS
Sbjct: 301 PSQPS 305



>Os10g0502900 Cyclin-like F-box domain containing protein
          Length = 321

 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 120/267 (44%), Gaps = 30/267 (11%)

Query: 9   RPWADLQHDLLVMIMSRVGLPDLLSGGATRACSAWRASARDPLVWRRVDLRDWAVLTSXX 68
           + W D+  D+LV I   + L +L     ++ C  W  +  DPL+W  +D     +L S  
Sbjct: 9   KRWEDMDTDVLVKIFKELNLVEL--SPVSQVCRLWHLACSDPLIWSTLDF---GLLKSNY 63

Query: 69  XXXXXXXXXXXXXXXXXVPLQAALCSVLEIVVRRAAGRMEALLLPE--FADEEHLLFLAQ 126
                                  L  +L + +  + G +  L+     +  +EHL ++++
Sbjct: 64  IQTRASPYIWVDDRS-----DKRLSRILRVAMSISYGNVSCLIFHYNLYMKDEHLHYISE 118

Query: 127 RNPNLHYFSLPA-TCITYDQFRKAIDKLQFLKGMAVDEGLINHD--VLSHVHQCCPDFLE 183
           R+P+L    +PA   IT     +AI + + L+ + +    I H   ++  + + C +F E
Sbjct: 119 RSPHLKRLVMPAWNRITKFGICQAIQRWEELESLTMPT--IGHPPYIMEEIARSCKNFAE 176

Query: 184 LKVFALYVDEEMASIICNSLPRLKKLEIPNSDMSCAAIIKFLDCLEELEYLDISG---YE 240
           LKV   + D+  AS I   LP+LK L +  S ++ +A++  LD +  LE L+IS    +E
Sbjct: 177 LKVMGSF-DDLFASAIATHLPKLKVLSLRCSKVTMSALLWLLDNMANLEVLNISHCLLFE 235

Query: 241 TSA---------ISSAVLQKASRLNIF 258
             A         +    LQKASRL  F
Sbjct: 236 IVANGRRQVIHELDDQTLQKASRLREF 262



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,284,509
Number of extensions: 379709
Number of successful extensions: 1561
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1566
Number of HSP's successfully gapped: 2
Length of query: 305
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 205
Effective length of database: 11,814,401
Effective search space: 2421952205
Effective search space used: 2421952205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 156 (64.7 bits)