Os03g0562200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os03g0562200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.45 | 0.272 | 9.61 | 0.245 | 0.951 | -0.597 | 0.145 | 0.129 | 0.306 | 1.86 | 75.57 | 1296 | -- | -- |
| 33.44 | 0.269 | 9.61 | 0.237 | 0.963 | -0.593 | 0.156 | -- | 0.299 | 1.81 | 74.41 | 1247 | -- | -- |
| 33.46 | 0.269 | 9.61 | 0.25 | 0.967 | -0.614 | -- | 0.267 | 0.3 | 1.83 | 74 | 1239 | -- | -- |
| 33.54 | 0.27 | 9.61 | 0.232 | 0.965 | -0.589 | -- | -- | 0.299 | 1.82 | 74.45 | 1244 | -- | -- |
| 47.05 | 0.321 | 9.59 | 0.15 | -- | -1.27 | -- | 0.535 | 0.375 | -- | 130 | 5 | -- | -- |
| 41.44 | 0.302 | 9.6 | 0.124 | 0.873 | -- | 0.0438 | -- | 0.344 | 1.89 | -- | -- | -- | -- |
| 41.45 | 0.301 | 9.6 | 0.123 | 0.873 | -- | -- | -- | 0.343 | 1.9 | -- | -- | -- | -- |
| 47.53 | 0.321 | 9.59 | 0.142 | -- | -1.22 | -- | -- | 0.371 | -- | 183.3 | 5 | -- | -- |
| 34.89 | 0.275 | 9.62 | -- | 0.965 | -0.541 | -- | -- | 0.285 | 1.84 | 74.98 | 1257 | -- | -- |
| 87.53 | 0.437 | 9.59 | 0.159 | -- | -- | -- | -- | 0.363 | -- | -- | -- | -- | -- |
| 41.85 | 0.303 | 9.61 | -- | 0.876 | -- | -- | -- | 0.33 | 1.9 | -- | -- | -- | -- |
| 48.07 | 0.323 | 9.6 | -- | -- | -1.22 | -- | -- | 0.355 | -- | 186.1 | 5 | -- | -- |
| 88.19 | 0.438 | 9.6 | -- | -- | -- | -- | -- | 0.346 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.95 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 2 | 33.28 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 3 | 33.37 | humidity | 80 | 1440 | < th | dose dependent | rect. | 8 | 6 |
| 11 | 33.47 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 20 |
| 14 | 33.52 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 25 | 33.62 | humidity | 80 | 1440 | < th | dose dependent | sin | 3 | NA |
| 40 | 33.70 | humidity | 80 | 1440 | < th | dose dependent | rect. | 18 | 20 |
| 46 | 33.73 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 56 | 33.77 | humidity | 80 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 73 | 33.83 | humidity | 50 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 81 | 33.85 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 87 | 33.86 | humidity | 70 | 1440 | < th | dose independent | rect. | 16 | 21 |
| 111 | 33.89 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 123 | 33.91 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 125 | 33.91 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 295 | 34.09 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 303 | 34.10 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 10 |
| 323 | 34.14 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 355 | 34.15 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 363 | 34.16 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 385 | 34.18 | radiation | 10 | 1440 | > th | dose independent | rect. | 17 | 20 |
| 437 | 34.23 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 530 | 34.27 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 7 |
| 602 | 34.33 | radiation | 10 | 1440 | < th | dose dependent | sin | 21 | NA |
| 634 | 34.37 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 723 | 34.46 | humidity | 70 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 725 | 34.46 | humidity | 70 | 1440 | > th | dose independent | rect. | 4 | 15 |
| 729 | 34.46 | humidity | 70 | 1440 | > th | dose independent | rect. | 21 | 22 |
| 743 | 34.47 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 767 | 34.49 | humidity | 70 | 1440 | < th | dose independent | rect. | 7 | 12 |
| 784 | 34.50 | radiation | 10 | 1440 | > th | dose independent | sin | 3 | NA |
| 785 | 34.50 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 788 | 34.50 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 797 | 34.51 | temperature | 20 | 90 | > th | dose independent | rect. | 18 | 10 |
| 799 | 34.51 | humidity | 70 | 1440 | > th | dose independent | rect. | 7 | 17 |
| 820 | 34.52 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 885 | 34.53 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 14 |
| 911 | 34.54 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 941 | 34.56 | humidity | 70 | 1440 | < th | dose independent | no | NA | NA |